Gene detail

Detailed information of OS493_035311-T1 in Lophelia pertusa

Genomic Location: scaffold_317:190198...194569
NR annotation: KAJ7351829.1, hypothetical protein OS493_035311 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5W7F4	A disintegrin and metalloproteinase with thrombospondin motifs 1 OS=Bombyx mori OX=7091 GN=ADAMTS-1 PE=2 SV=1
P50430	Arylsulfatase B OS=Rattus norvegicus OX=10116 GN=Arsb PE=2 SV=2
P50429	Arylsulfatase B OS=Mus musculus OX=10090 GN=Arsb PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000160 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13688 all species →	Reprolysin_5	Metallo-peptidase family M12	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017850 all species →	Homologous_superfamily	Alkaline-phosphatase-like, core domain superfamily	Interproscan
IPR001590 all species →	Domain	Peptidase M12B, ADAM/reprolysin	Interproscan
IPR050439 all species →	Family	ADAMTS and ADAMTS-like	Interproscan
IPR024079 all species →	Homologous_superfamily	Metallopeptidase, catalytic domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13723 all species →	ADAMTS A DISINTEGRIN AND METALLOPROTEASE WITH THROMBOSPONDIN MOTIFS PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0030198 all species →	Biological Process	extracellular matrix organization	Interproscan
GO:0031012 all species →	Cellular Component	extracellular matrix	Interproscan
GO:0008237 all species →	Molecular Function	metallopeptidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035311-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035311-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

93TPM > 0

7Conditions

8.6Max TPM

2.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	13	1.57	3.89
polyp at pH7 6	18	12	1.16	2.72
coral polyp · control treatment	16	16	2.74	5.01
coral polyp · oil and dispersant treatment	16	15	2.23	5.65
coral polyp · oil treatment	16	16	2.64	4.80
coral polyp · dispersant treatment	16	16	3.33	8.63
Polyp	10	5	0.64	3.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.89
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.02
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.20
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.13
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.29
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.19
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.17
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.68
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.06
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.52
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.47
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.82
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.58
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.21
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.94
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.77
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.59
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.37
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.72
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.41
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.82
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.65
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.72
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.60
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.93
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.68
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.40
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.33
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.14
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.69
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.55
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.46
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.38
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.33
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.21
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.03
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.01
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.63
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.15
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.98
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.42
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.19
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.03
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	1.79
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.15
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.23
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.