Gene detail

Detailed information of OS493_035385-T1 in Lophelia pertusa

Genomic Location: scaffold_319:172552...179958
NR annotation: KAJ7388828.1, hypothetical protein OS493_035385 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0FKN5	Prestin OS=Gallus gallus OX=9031 GN=SLC26A5 PE=1 SV=1
Q9BXS9	Solute carrier family 26 member 6 OS=Homo sapiens OX=9606 GN=SLC26A6 PE=1 SV=1
Q7T2C4	Prestin OS=Danio rerio OX=7955 GN=slc26a5 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001302 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00916 all species →	Sulfate_transp	Sulfate permease family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001902 all species →	Family	SLC26A/SulP transporter	Interproscan
IPR011547 all species →	Domain	SLC26A/SulP transporter domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11814 all species →	SULFATE TRANSPORTER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0015106 all species →	Molecular Function	bicarbonate transmembrane transporter activity	Interproscan
GO:0015108 all species →	Molecular Function	chloride transmembrane transporter activity	Interproscan
GO:0015116 all species →	Molecular Function	sulfate transmembrane transporter activity	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0019531 all species →	Molecular Function	oxalate transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035385-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035385-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

30.8Max TPM

11.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	10.17	14.62
polyp at pH7 6	18	18	9.98	18.61
coral polyp · control treatment	16	16	13.79	26.09
coral polyp · oil and dispersant treatment	16	16	15.61	30.79
coral polyp · oil treatment	16	16	11.88	21.07
coral polyp · dispersant treatment	16	16	9.89	16.04
Polyp	10	9	4.69	10.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.62
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.63
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.36
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.07
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.93
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.61
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.07
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.37
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.41
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.57
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.14
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.94
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.16
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.05
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.70
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.02
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.06
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.84
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.37
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.73
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.78
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.06
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.29
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.81
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.45
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.64
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.95
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.93
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.92
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.64
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.41
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.46
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.41
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.85
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.46
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.07
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.63
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.41
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.70
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.75
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.67
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.51
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.33
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.88
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.74
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.04
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.29
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.50
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.77
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.51
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.11
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.87
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.06
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.63
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.49
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	7.91
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.71
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.61
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	4.90
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.48
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.64
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.