Gene detail

Detailed information of OS493_035400-T1 in Lophelia pertusa

Genomic Location: scaffold_319:264241...272003
NR annotation: KAJ7388842.1, Alpha-mannosidase 2C1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NTJ4	Alpha-mannosidase 2C1 OS=Homo sapiens OX=9606 GN=MAN2C1 PE=1 SV=1
Q91W89	Alpha-mannosidase 2C1 OS=Mus musculus OX=10090 GN=Man2c1 PE=1 SV=1
P21139	Alpha-mannosidase 2C1 OS=Rattus norvegicus OX=10116 GN=Man2c1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003387 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09261 all species →	Alpha-mann_mid	Alpha mannosidase middle domain	Domain	Interproscan
PF01074 all species →	Glyco_hydro_38N	Glycosyl hydrolases family 38 N-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028995 all species →	Homologous_superfamily	Glycoside hydrolase families 57/38, central domain superfamily	Interproscan
IPR015341 all species →	Domain	Glycoside hydrolase family 38, central domain	Interproscan
IPR011330 all species →	Homologous_superfamily	Glycoside hydrolase/deacetylase, beta/alpha-barrel	Interproscan
IPR027291 all species →	Homologous_superfamily	Glycoside hydrolase 38, N-terminal domain superfamily	Interproscan
IPR037094 all species →	Homologous_superfamily	Glycoside hydrolase family 38, central domain superfamily	Interproscan
IPR000602 all species →	Domain	Glycoside hydrolase family 38, N-terminal domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46017 all species →	ALPHA-MANNOSIDASE 2C1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0009313 all species →	Biological Process	oligosaccharide catabolic process	Interproscan
GO:0006013 all species →	Biological Process	mannose metabolic process	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035400-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035400-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

10.9Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	3.92	9.64
polyp at pH7 6	18	16	4.11	7.08
coral polyp · control treatment	16	16	3.70	10.93
coral polyp · oil and dispersant treatment	16	16	2.99	6.42
coral polyp · oil treatment	16	16	3.79	8.49
coral polyp · dispersant treatment	16	16	3.69	9.70
Polyp	10	8	2.03	5.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.50
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.82
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.26
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.14
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.03
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.94
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.40
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.13
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.08
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.73
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.80
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.47
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.19
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.80
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.45
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.80
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.92
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.31
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.12
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.93
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.28
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.67
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.87
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.73
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.09
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.21
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.19
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.05
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.75
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.90
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.42
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.49
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.31
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.58
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.52
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.61
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.57
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.65
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.51
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.15
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.70
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.24
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.89
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.26
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.01
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.82
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.47
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.09
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.63
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.17
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.