Gene detail

Detailed information of OS493_035401-T1 in Lophelia pertusa

Genomic Location: scaffold_319:289674...299403
NR annotation: KAJ7388843.1, Alpha-mannosidase 2C1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NTJ4	Alpha-mannosidase 2C1 OS=Homo sapiens OX=9606 GN=MAN2C1 PE=1 SV=1
P21139	Alpha-mannosidase 2C1 OS=Rattus norvegicus OX=10116 GN=Man2c1 PE=1 SV=1
Q91W89	Alpha-mannosidase 2C1 OS=Mus musculus OX=10090 GN=Man2c1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003387 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17677 all species →	Glyco_hydro38C2	Glycosyl hydrolases family 38 C-terminal beta sandwich domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR041147 all species →	Domain	Glycosyl hydrolases family 38, C-terminal beta sandwich domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46017 all species →	ALPHA-MANNOSIDASE 2C1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0004559 all species →	Molecular Function	alpha-mannosidase activity	Interproscan
GO:0009313 all species →	Biological Process	oligosaccharide catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035401-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035401-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

23.8Max TPM

10.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	11.10	17.90
polyp at pH7 6	18	18	12.92	19.29
coral polyp · control treatment	16	16	9.58	20.94
coral polyp · oil and dispersant treatment	16	15	7.55	15.69
coral polyp · oil treatment	16	16	10.37	22.91
coral polyp · dispersant treatment	16	16	7.23	20.82
Polyp	10	9	11.06	23.80

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.90
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.81
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.74
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.51
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.88
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.48
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.45
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.15
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.69
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.40
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.22
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.29
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.67
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.92
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.75
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.49
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.73
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.72
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.17
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.75
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.39
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.08
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.32
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.50
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.73
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.96
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.26
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.69
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.04
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.86
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.96
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.76
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.22
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.65
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.91
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.79
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.37
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.40
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.24
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.91
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.09
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.40
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.28
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.58
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.01
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.30
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.02
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.89
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.47
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.34
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.13
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	23.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	16.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.01
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	8.60
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.68
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.