Gene detail

Detailed information of OS493_035418-T1 in Lophelia pertusa

Genomic Location: scaffold_320:68106...72503
NR annotation: KAJ7382358.1, Netrin receptor unc5c [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08747	Netrin receptor UNC5C OS=Mus musculus OX=10090 GN=Unc5c PE=1 SV=1
Q761X5	Netrin receptor UNC5C OS=Rattus norvegicus OX=10116 GN=Unc5c PE=1 SV=1
Q7T2Z5	Netrin receptor UNC5C OS=Gallus gallus OX=9031 GN=UNC5C PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002089 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17217 all species →	UPA	UPA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033772 all species →	Domain	UPA domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_035418-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_035418-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035418-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035418-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

94.0Max TPM

27.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	39.41	78.24
polyp at pH7 6	18	17	34.67	53.74
coral polyp · control treatment	16	16	32.74	93.95
coral polyp · oil and dispersant treatment	16	16	12.11	32.79
coral polyp · oil treatment	16	16	24.37	58.41
coral polyp · dispersant treatment	16	16	15.96	41.73
Polyp	10	10	35.54	73.14

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.24
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	69.90
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	45.44
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.15
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.37
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.19
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.32
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.89
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.80
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.87
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.77
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.34
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.28
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.69
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	53.74
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	52.50
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.92
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.17
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	46.72
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.17
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.57
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.28
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.06
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.93
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.39
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.96
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.33
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.97
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.93
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.50
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.95
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.33
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.76
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.90
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.22
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.13
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.64
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.63
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.28
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.79
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.44
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.96
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.79
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.12
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.48
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.51
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.46
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.55
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.41
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.97
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.32
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.64
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.34
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.10
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.86
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.80
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.71
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.72
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.86
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.73
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.13
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.00
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.79
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.63
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.58
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.55
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.88
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.05
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	73.14
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	62.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	50.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	43.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	29.49
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	25.25
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	23.95
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.94
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.91

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.