Gene detail

Detailed information of OS493_035420-T1 in Lophelia pertusa

Genomic Location: scaffold_320:86872...91711
NR annotation: KAJ7382360.1, Netrin receptor unc5c [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002089 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17217 all species →	UPA	UPA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033772 all species →	Domain	UPA domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_035420-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_035420-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035420-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035420-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

1,576.2Max TPM

471.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	650.56	1,576.18
polyp at pH7 6	18	18	625.04	1,033.98
coral polyp · control treatment	16	16	532.45	1,243.10
coral polyp · oil and dispersant treatment	16	16	300.37	1,001.33
coral polyp · oil treatment	16	16	362.92	830.23
coral polyp · dispersant treatment	16	16	292.56	562.69
Polyp	10	10	509.77	741.79

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,576.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1,575.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	912.70
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	903.07
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	878.97
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	864.06
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	856.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	811.16
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	572.45
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	566.94
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	346.89
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	346.82
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	287.97
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	276.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	258.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	256.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	209.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	209.95
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,033.98
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,027.82
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,019.75
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1,009.97
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	892.83
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	857.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	814.73
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	807.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	583.59
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	555.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	542.54
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	542.33
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	304.60
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	299.43
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	255.34
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	252.70
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	231.34
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	219.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,243.10
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,006.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	929.16
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	874.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	760.23
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	612.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	572.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	543.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	415.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	358.51
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	258.55
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	253.88
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	206.70
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	196.77
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.72
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,001.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	494.39
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	434.22
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	340.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	301.60
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	298.55
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	261.51
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	225.02
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	222.25
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	221.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	212.09
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	188.95
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	178.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	178.67
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	165.01
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	81.40
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	830.23
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	547.19
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	535.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	504.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	491.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	402.04
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	367.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	327.91
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	316.93
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	310.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	239.59
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	221.18
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	198.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	189.17
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	175.14
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	149.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	562.69
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	478.85
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	449.22
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	382.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	369.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	365.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	310.80
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	291.92
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	287.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	271.79
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	234.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	216.27
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	151.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	151.41
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	90.50
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	741.79
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	716.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	683.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	606.44
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	502.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	458.73
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	438.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	384.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	292.17
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	274.61

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.