Gene detail

Detailed information of OS493_035424-T1 in Lophelia pertusa

Genomic Location: scaffold_320:116709...118856
NR annotation: KAJ7382364.1, Netrin receptor unc5c [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O08747	Netrin receptor UNC5C OS=Mus musculus OX=10090 GN=Unc5c PE=1 SV=1
Q761X5	Netrin receptor UNC5C OS=Rattus norvegicus OX=10116 GN=Unc5c PE=1 SV=1
Q7T2Z5	Netrin receptor UNC5C OS=Gallus gallus OX=9031 GN=UNC5C PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002089 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF17217 all species →	UPA	UPA domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033772 all species →	Domain	UPA domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_035424-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

No Gene Ontology signature was detected for OS493_035424-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035424-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035424-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

131.1Max TPM

43.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	65.52	120.21
polyp at pH7 6	18	18	57.60	116.07
coral polyp · control treatment	16	16	50.74	131.15
coral polyp · oil and dispersant treatment	16	16	19.41	37.67
coral polyp · oil treatment	16	16	35.98	61.83
coral polyp · dispersant treatment	16	16	29.71	63.13
Polyp	10	10	35.40	72.08

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	119.64
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	91.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	90.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	88.85
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	83.17
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.20
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	75.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	73.42
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.56
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.68
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.63
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.96
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.92
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.44
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	116.07
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	112.28
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	74.96
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	71.03
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	68.55
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.55
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	64.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.22
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.68
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.86
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.18
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	44.63
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.18
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.01
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	131.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.16
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.96
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.28
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	69.44
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.97
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.88
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.15
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.33
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.41
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.57
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.52
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.34
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.01
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.67
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.24
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.44
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.75
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.14
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.11
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.20
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.65
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.23
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.90
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.03
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.99
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	61.83
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.41
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.30
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.80
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.79
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	41.68
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.17
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.77
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.85
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.43
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.26
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.44
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.79
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.13
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	60.77
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.46
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.40
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.32
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.38
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.52
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.25
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.94
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.98
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.89
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.96
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.17
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.26
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.13
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	72.08
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	61.47
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	46.32
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	44.60
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	31.20
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.33
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	20.10
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	18.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	15.34

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.