Gene detail

Detailed information of OS493_035434-T1 in Lophelia pertusa

Genomic Location: scaffold_320:227529...239293
NR annotation: KAJ7382373.1, hypothetical protein OS493_035434 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8N357	Solute carrier family 35 member F6 OS=Homo sapiens OX=9606 GN=SLC35F6 PE=1 SV=1
Q5RFT1	Solute carrier family 35 member F6 OS=Pongo abelii OX=9601 GN=SLC35F6 PE=2 SV=1
Q5RKH7	Solute carrier family 35 member F6 OS=Rattus norvegicus OX=10116 GN=Slc35f6 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004921 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06027 all species →	SLC35F	Solute carrier family 35	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR009262 all species →	Family	Solute carrier family 35 member SLC35F1/F2/F6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13146 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0043231 all species →	Cellular Component	intracellular membrane-bounded organelle	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035434-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035434-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

12.1Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.83	10.14
polyp at pH7 6	18	17	4.49	10.74
coral polyp · control treatment	16	16	4.77	9.64
coral polyp · oil and dispersant treatment	16	16	3.42	7.76
coral polyp · oil treatment	16	16	4.57	12.12
coral polyp · dispersant treatment	16	16	3.82	8.82
Polyp	10	9	2.77	7.27

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.05
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.32
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.20
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.78
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.68
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.58
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.37
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.93
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.60
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.94
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.99
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.79
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.42
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.25
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.20
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.14
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.08
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.87
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.54
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.13
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.09
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.96
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.32
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.78
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.73
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.23
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.18
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.88
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.76
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.03
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.71
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.51
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.39
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.59
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.03
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.23
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.90
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.12
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.18
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.47
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.30
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.54
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.10
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.83
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.93
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.79
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.07
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.54
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.40
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.16
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.66
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.53
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.42
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.27
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.95
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.33
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.21
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.08
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.61
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.50
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.