Detailed information of OS493_035450-T1 in Lophelia pertusa

Genomic Location: scaffold_321:61215...66668
NR annotation: KAJ7376310.1, Malate synthase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
P21360Malate synthase, glyoxysomal OS=Pichia angusta OX=870730 GN=MAS PE=1 SV=1
Q8T2K9Malate synthase OS=Dictyostelium discoideum OX=44689 GN=masA PE=2 SV=2
P28345Malate synthase, glyoxysomal OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A / CBS 708.71 / DSM 1257 / FGSC 987) OX=367110 GN=acu-9 PE=3 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002008 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF20656
all species →		MS_NMalate synthase, N-terminal domainDomainInterproscan
PF01274
all species →		MS_TIM-barrelMalate synthase, TIM barrel domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011076
all species →		Homologous_superfamilyMalate synthase superfamilyInterproscan
IPR046363
all species →		Homologous_superfamilyMalate synthase, N-terminal and TIM-barrel domainsInterproscan
IPR006252
all species →		FamilyMalate synthase AInterproscan
IPR048356
all species →		DomainMalate synthase, N-terminal domainInterproscan
IPR001465
all species →		DomainMalate synthase, TIM barrel domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR42902
all species →		MALATE SYNTHASEInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0003824
all species →		Molecular Functioncatalytic activityInterproscan
GO:0004474
all species →		Molecular Functionmalate synthase activityInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0006097
all species →		Biological Processglyoxylate cycleInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_035450-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_035450-T1 global co-expression network
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