Gene detail

Detailed information of OS493_035468-T1 in Lophelia pertusa

Genomic Location: scaffold_321:219870...224844
NR annotation: KAJ7376326.1, Arachidonate 5-lipoxygenase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O16025	Allene oxide synthase-lipoxygenase protein OS=Plexaura homomalla OX=47982 PE=1 SV=1
P09917	Polyunsaturated fatty acid 5-lipoxygenase OS=Homo sapiens OX=9606 GN=ALOX5 PE=1 SV=2
P51399	Polyunsaturated fatty acid 5-lipoxygenase OS=Mesocricetus auratus OX=10036 GN=ALOX5 PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000523 (this species only) · gene tree & orthology

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01477 all species →	PLAT	PLAT/LH2 domain	Domain	Interproscan
PF00305 all species →	Lipoxygenase	Lipoxygenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001024 all species →	Domain	PLAT/LH2 domain	Interproscan
IPR013819 all species →	Domain	Lipoxygenase, C-terminal	Interproscan
IPR020834 all species →	Conserved_site	Lipoxygenase, conserved site	Interproscan
IPR000907 all species →	Family	Lipoxygenase	Interproscan
IPR036226 all species →	Homologous_superfamily	Lipoxigenase, C-terminal domain superfamily	Interproscan
IPR036392 all species →	Homologous_superfamily	PLAT/LH2 domain superfamily	Interproscan
IPR020833 all species →	Binding_site	Lipoxygenase, iron binding site	Interproscan
IPR001885 all species →	Family	Lipoxygenase, mammalian	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11771 all species →	LIPOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0046872 all species →	Molecular Function	metal ion binding	Interproscan
GO:0034440 all species →	Biological Process	lipid oxidation	Interproscan
GO:0005506 all species →	Molecular Function	iron ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035468-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035468-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

77.3Max TPM

20.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.60	24.66
polyp at pH7 6	18	18	15.34	26.06
coral polyp · control treatment	16	16	25.16	48.90
coral polyp · oil and dispersant treatment	16	16	20.32	52.52
coral polyp · oil treatment	16	16	32.11	77.28
coral polyp · dispersant treatment	16	16	20.88	56.43
Polyp	10	10	12.82	40.44

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.66
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.55
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.51
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.47
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.63
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.02
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.01
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.55
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.52
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.48
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.68
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.96
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.53
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.81
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.51
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.58
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.06
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.13
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.01
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.98
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.25
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.61
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.22
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.99
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.61
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.38
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.64
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	44.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.25
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.06
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.45
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.66
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.25
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.55
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.00
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.74
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.12
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.13
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.86
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.33
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.46
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.02
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.97
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.94
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.69
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.36
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.08
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.20
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.80
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	66.95
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.91
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	56.42
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.43
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.31
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.86
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.18
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.54
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.88
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.88
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.53
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.15
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.43
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	48.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.44
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.03
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.60
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.95
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.40
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.73
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.04
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.99
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.75
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.28
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	40.44
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.85
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	10.82
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	9.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.74
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.05
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.82

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.