Gene detail

Detailed information of OS493_035514-T1 in Lophelia pertusa

Genomic Location: scaffold_323:121580...123229
NR annotation: KAJ7351789.1, EF-hand domain-containing protein 1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5JVL4	EF-hand domain-containing protein 1 OS=Homo sapiens OX=9606 GN=EFHC1 PE=1 SV=1
E1BKH1	EF-hand domain-containing protein 1 OS=Bos taurus OX=9913 GN=EFHC1 PE=1 SV=1
Q9D9T8	EF-hand domain-containing protein 1 OS=Mus musculus OX=10090 GN=Efhc1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001941 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF06565 all species →	DM10_dom	DM10 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR006602 all species →	Domain	DM10 domain	Interproscan
IPR040193 all species →	Family	EF-hand domain-containing protein EFHC1/EFHC2/EFHB	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12086 all species →	EF-HAND DOMAIN C-TERMINAL CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000281 all species →	Biological Process	mitotic cytokinesis	Interproscan
GO:0005930 all species →	Cellular Component	axoneme	Interproscan
GO:0007052 all species →	Biological Process	mitotic spindle organization	Interproscan
GO:0043014 all species →	Molecular Function	alpha-tubulin binding	Interproscan
GO:0060285 all species →	Biological Process	cilium-dependent cell motility	Interproscan
GO:0072686 all species →	Cellular Component	mitotic spindle	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035514-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035514-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

121.2Max TPM

33.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.27	35.54
polyp at pH7 6	18	18	19.39	31.30
coral polyp · control treatment	16	16	47.91	121.17
coral polyp · oil and dispersant treatment	16	16	41.13	91.47
coral polyp · oil treatment	16	16	34.26	49.11
coral polyp · dispersant treatment	16	16	44.53	96.43
Polyp	10	10	31.72	41.02

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.54
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.28
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.08
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.11
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.05
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.84
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.82
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.71
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.90
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.83
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.65
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.36
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.09
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.92
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.30
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.49
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.03
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.46
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.35
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.64
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.31
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.20
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.34
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.08
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.06
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.90
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.81
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.97
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.57
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	121.17
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	118.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	92.01
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.50
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.68
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.18
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.33
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.43
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.17
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.71
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.67
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.97
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.57
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.30
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.21
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.47
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.89
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.78
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.09
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.42
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.77
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.45
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.14
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.94
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.67
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.50
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.44
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.49
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.28
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.52
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.04
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.37
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	35.42
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.61
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.24
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.24
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.70
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.06
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	96.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	74.86
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	59.98
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	55.80
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	54.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.21
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.63
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.21
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.94
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.04
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.10
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.20
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.23
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.15
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	41.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	40.68
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	37.84
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	35.05
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	33.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	31.83
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	28.04
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	25.27
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.39
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	21.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.