Gene detail

Detailed information of OS493_035516-T1 in Lophelia pertusa

Genomic Location: scaffold_323:128110...133059
NR annotation: KAJ7351791.1, Dual specificity protein kinase clk2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O35491	Dual specificity protein kinase CLK2 OS=Mus musculus OX=10090 GN=Clk2 PE=1 SV=2
P49760	Dual specificity protein kinase CLK2 OS=Homo sapiens OX=9606 GN=CLK2 PE=1 SV=1
P49762	Serine/threonine-protein kinase Doa OS=Drosophila melanogaster OX=7227 GN=Doa PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005854 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00069 all species →	Pkinase	Protein kinase domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008271 all species →	Active_site	Serine/threonine-protein kinase, active site	Interproscan
IPR011009 all species →	Homologous_superfamily	Protein kinase-like domain superfamily	Interproscan
IPR000719 all species →	Domain	Protein kinase domain	Interproscan
IPR017441 all species →	Binding_site	Protein kinase, ATP binding site	Interproscan
IPR051175 all species →	Family	Dual specificity CLK kinases	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45646 all species →	SERINE/THREONINE-PROTEIN KINASE DOA-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004672 all species →	Molecular Function	protein kinase activity	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0043484 all species →	Biological Process	regulation of RNA splicing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08823	CLK2_3; dual specificity protein kinase CLK2/3	EC:2.7.12.1	Spliceosome	ko03041	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035516-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

638.7Max TPM

243.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	210.14	290.47
polyp at pH7 6	18	18	213.06	317.91
coral polyp · control treatment	16	16	214.13	350.07
coral polyp · oil and dispersant treatment	16	16	315.26	638.66
coral polyp · oil treatment	16	16	246.41	445.60
coral polyp · dispersant treatment	16	16	269.54	469.41
Polyp	10	10	242.61	412.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	290.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	275.75
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	266.87
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	261.77
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	249.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	247.15
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	242.60
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	229.79
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	221.16
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	211.20
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	176.55
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	176.47
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	158.08
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.90
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.36
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	155.54
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	154.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	151.24
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	317.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	309.41
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	292.36
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	289.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	283.62
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	279.24
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	254.16
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	237.24
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	207.96
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	202.39
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	166.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	156.20
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	151.42
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	149.40
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	146.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	139.18
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	134.60
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	117.21
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	350.07
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	326.71
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	257.11
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	249.76
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	246.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	228.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	207.68
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	202.98
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	199.31
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	191.65
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	187.53
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	185.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	171.72
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	147.48
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	144.14
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.88
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	638.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	508.63
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	430.74
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	403.58
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	356.25
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	315.30
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	312.19
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	283.68
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	262.18
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	260.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	257.25
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	227.80
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	207.45
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	206.04
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	205.83
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.71
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	445.60
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	414.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	304.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	292.67
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	270.23
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	261.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	257.91
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	244.64
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	208.70
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	201.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	197.07
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	188.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	187.17
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	172.07
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	149.24
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	146.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	469.41
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	347.92
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	317.65
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	299.73
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	285.63
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	280.05
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	277.74
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	275.50
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	266.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	261.25
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	257.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	219.04
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	215.35
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	186.09
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	184.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	168.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	412.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	364.75
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	321.62
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	302.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	276.67
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	234.58
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	155.45
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	152.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	107.97
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	97.90

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.