Gene detail

Detailed information of OS493_035569-T1 in Lophelia pertusa

Genomic Location: scaffold_325:104122...108550
NR annotation: KAJ7388785.1, 40S ribosomal protein S6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9BMX5	Small ribosomal subunit protein eS6 OS=Aplysia californica OX=6500 GN=RPS6 PE=2 SV=1
Q5E995	Small ribosomal subunit protein eS6 OS=Bos taurus OX=9913 GN=RPS6 PE=2 SV=1
P62753	Small ribosomal subunit protein eS6 OS=Homo sapiens OX=9606 GN=RPS6 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007801 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01092 all species →	Ribosomal_S6e	Ribosomal protein S6e	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001377 all species →	Family	Small ribosomal subunit protein eS6	Interproscan
IPR018282 all species →	Conserved_site	Small ribosomal subunit protein eS6, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11502 all species →	40S RIBOSOMAL PROTEIN S6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003735 all species →	Molecular Function	structural constituent of ribosome	Interproscan
GO:0005840 all species →	Cellular Component	ribosome	Interproscan
GO:0006412 all species →	Biological Process	translation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035569-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035569-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

7,283.7Max TPM

3,237.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3,481.39	4,271.55
polyp at pH7 6	18	18	3,326.04	4,097.84
coral polyp · control treatment	16	16	3,171.62	5,451.32
coral polyp · oil and dispersant treatment	16	16	2,738.93	4,923.44
coral polyp · oil treatment	16	16	3,413.82	5,164.36
coral polyp · dispersant treatment	16	16	2,525.79	7,283.68
Polyp	10	10	4,400.76	5,091.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,271.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,269.94
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,262.47
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4,214.89
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,743.83
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,709.06
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,699.87
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,677.94
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,670.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,646.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,157.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,082.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3,061.10
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,995.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,891.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,826.03
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,752.87
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	2,732.12
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,097.84
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4,095.58
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,669.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,605.32
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,521.73
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,447.44
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,333.26
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,312.09
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,301.83
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,294.11
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,255.27
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,236.15
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3,224.29
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,998.09
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,908.64
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,881.23
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,850.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	2,836.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5,451.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4,474.21
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,878.01
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,865.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,737.68
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,676.49
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,512.41
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3,141.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,848.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,622.29
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,577.38
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,552.43
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,415.28
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2,387.09
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,838.89
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1,766.81
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4,923.44
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,356.55
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3,321.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,983.51
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,861.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,747.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,644.28
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,582.02
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,501.58
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,444.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,422.62
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,358.24
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,355.40
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,243.98
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2,238.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1,838.22
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5,164.36
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,746.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4,007.12
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,823.69
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,553.36
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,391.40
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,324.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,310.21
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,290.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,284.45
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3,233.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,983.16
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,900.05
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,653.91
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,635.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2,320.04
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7,283.68
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4,496.43
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,645.39
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,498.23
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,447.06
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,171.51
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,155.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,148.65
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,126.46
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2,037.79
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,946.92
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,920.82
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,792.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,726.49
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,589.61
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1,426.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5,091.83
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4,939.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4,764.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4,674.40
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4,534.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4,352.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4,115.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3,975.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3,970.62
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3,589.61

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.