Gene detail

Detailed information of OS493_035579-T1 in Lophelia pertusa

Genomic Location: scaffold_325:171573...181700
NR annotation: KAJ7388795.1, Molybdopterin synthase catalytic subunit [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4FUY7	Molybdopterin synthase catalytic subunit OS=Bos taurus OX=9913 GN=MOCS2 PE=2 SV=2
O96007	Molybdopterin synthase catalytic subunit OS=Homo sapiens OX=9606 GN=MOCS2 PE=1 SV=1
Q6AY59	Molybdopterin synthase catalytic subunit OS=Rattus norvegicus OX=10116 GN=Mocs2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002848 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02391 all species →	MoaE	MoaE protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR028888 all species →	Family	Molybdopterin synthase catalytic subunit, eukaryotes	Interproscan
IPR036563 all species →	Homologous_superfamily	Molybdopterin biosynthesis MoaE subunit superfamily	Interproscan
IPR003448 all species →	Family	Molybdopterin biosynthesis MoaE	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23404 all species →	MOLYBDOPTERIN SYNTHASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0006777 all species →	Biological Process	Mo-molybdopterin cofactor biosynthetic process	Interproscan
GO:0019008 all species →	Cellular Component	obsolete molybdopterin synthase complex	Interproscan
GO:0030366 all species →	Molecular Function	molybdopterin synthase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K03635	MOCS2B, moaE; molybdopterin synthase catalytic subunit	EC:2.8.1.12	Sulfur relay system	ko04122	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035579-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

36.1Max TPM

11.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.70	21.44
polyp at pH7 6	18	17	12.66	20.92
coral polyp · control treatment	16	16	14.30	30.24
coral polyp · oil and dispersant treatment	16	16	10.33	36.12
coral polyp · oil treatment	16	16	15.34	27.20
coral polyp · dispersant treatment	16	16	7.96	19.07
Polyp	10	9	6.72	14.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.44
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.74
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.88
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.70
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.14
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.10
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.52
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.57
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.76
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.70
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.56
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.95
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.95
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.92
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.19
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.17
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.91
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.89
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.66
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.94
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.77
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.24
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.97
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.24
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.18
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.59
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.23
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.18
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.29
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.60
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.87
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.61
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.29
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.24
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.49
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.12
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.27
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.75
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.36
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.67
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.14
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.37
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.29
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.71
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.37
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.97
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.77
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.48
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.40
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.43
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.64
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.40
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.25
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.66
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.44
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.73
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.09
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.01
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.00
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.55
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.62
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.47
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	13.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	11.11
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.20
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.20
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.49
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.37
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.16
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.