Gene detail

Detailed information of OS493_035580-T1 in Lophelia pertusa

Genomic Location: scaffold_325:181702...182765
NR annotation: KAJ7388796.1, Molybdopterin synthase catalytic subunit [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
B3M269	Molybdopterin synthase sulfur carrier subunit OS=Drosophila ananassae OX=7217 GN=Mocs2A PE=3 SV=1
B4PUD0	Molybdopterin synthase sulfur carrier subunit OS=Drosophila yakuba OX=7245 GN=Mocs2A PE=3 SV=1
B3P6R4	Molybdopterin synthase sulfur carrier subunit OS=Drosophila erecta OX=7220 GN=Mocs2A PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002848 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02597 all species →	ThiS	ThiS family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003749 all species →	Family	Sulfur carrier ThiS/MoaD-like	Interproscan
IPR016155 all species →	Homologous_superfamily	Molybdopterin synthase/thiamin biosynthesis sulphur carrier, beta-grasp	Interproscan
IPR012675 all species →	Homologous_superfamily	Beta-grasp domain superfamily	Interproscan
IPR044672 all species →	Family	Molybdopterin synthase sulfur carrier subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33359 all species →	MOLYBDOPTERIN SYNTHASE SULFUR CARRIER SUBUNIT	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006777 all species →	Biological Process	Mo-molybdopterin cofactor biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21232	MOCS2A, CNXG; molybdopterin synthase sulfur carrier subunit	-	Sulfur relay system	ko04122	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035580-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

21.3Max TPM

7.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	6.48	10.75
polyp at pH7 6	18	15	6.28	11.88
coral polyp · control treatment	16	16	10.56	21.29
coral polyp · oil and dispersant treatment	16	16	6.97	13.74
coral polyp · oil treatment	16	16	10.80	19.44
coral polyp · dispersant treatment	16	16	7.25	19.48
Polyp	10	9	3.72	8.00

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.71
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.24
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.77
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.89
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.69
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.68
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.41
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.15
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.72
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.88
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.84
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.96
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.20
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.29
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.19
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.09
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.93
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.05
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.93
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.12
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.79
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.71
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.29
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.52
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.67
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.14
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.92
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.53
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.18
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.88
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.74
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.06
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.79
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.85
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.68
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.82
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.35
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.30
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.66
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.21
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.54
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.90
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.76
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.13
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.56
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.03
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.68
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.54
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.21
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.40
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.50
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.18
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.64
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.46
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.17
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.38
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.29
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.63
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.47
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.80
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.21
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	7.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.20
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.79
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.55
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.64
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.48
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.28
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.25
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.