Gene detail

Detailed information of OS493_035603-T1 in Lophelia pertusa

Genomic Location: scaffold_326:130044...139010
NR annotation: KAJ7382326.1, iso-1-cytochrome c [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P00125	Cytochrome c1, heme protein, mitochondrial OS=Bos taurus OX=9913 GN=CYC1 PE=1 SV=2
Q9D0M3	Cytochrome c1, heme protein, mitochondrial OS=Mus musculus OX=10090 GN=Cyc1 PE=1 SV=1
P08574	Cytochrome c1, heme protein, mitochondrial OS=Homo sapiens OX=9606 GN=CYC1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006992 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02167 all species →	Cytochrom_C1	Cytochrome C1 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002326 all species →	Family	Cytochrome c1	Interproscan
IPR021157 all species →	Homologous_superfamily	Cytochrome c1, transmembrane anchor, C-terminal	Interproscan
IPR009056 all species →	Domain	Cytochrome c-like domain	Interproscan
IPR036909 all species →	Homologous_superfamily	Cytochrome c-like domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10266 all species →	CYTOCHROME C1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0009055 all species →	Molecular Function	electron transfer activity	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan
GO:0005750 all species →	Cellular Component	obsolete mitochondrial respiratory chain complex III	Interproscan
GO:0006122 all species →	Biological Process	mitochondrial electron transport, ubiquinol to cytochrome c	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00413	CYC1, CYT1, petC; ubiquinol-cytochrome c reductase cytochrome c1 subunit	-	Non-alcoholic fatty liver disease	ko04932	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035603-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

454.0Max TPM

52.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	40.49	67.27
polyp at pH7 6	18	18	42.57	57.23
coral polyp · control treatment	16	16	78.62	454.00
coral polyp · oil and dispersant treatment	16	16	69.47	364.36
coral polyp · oil treatment	16	16	49.58	70.61
coral polyp · dispersant treatment	16	16	35.10	65.49
Polyp	10	10	54.63	80.65

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	67.27
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.22
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.61
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.14
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.95
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.04
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.25
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.60
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.52
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.44
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.77
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.48
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.78
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	57.23
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.66
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	51.56
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	50.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	49.53
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.88
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.24
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.13
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.88
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.52
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.23
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.55
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	454.00
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	68.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.44
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	66.71
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	60.43
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.05
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.57
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.06
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.71
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	48.59
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.60
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.48
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	46.13
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.91
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	364.36
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.36
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	66.71
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.87
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.08
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.29
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.86
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.43
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	49.57
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.80
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.64
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.61
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.81
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.84
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	57.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.95
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	53.13
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	52.11
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.59
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.66
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.58
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.16
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.95
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.49
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.24
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.30
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	36.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.24
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.11
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.44
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.20
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.61
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.36
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.03
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.91
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	80.65
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	78.83
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	67.97
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	56.03
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	53.96
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	52.38
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	45.12
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	45.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	40.30
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	26.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.