Gene detail

Detailed information of OS493_035621-T1 in Lophelia pertusa

Genomic Location: scaffold_326:303084...307485
NR annotation: KAJ7382344.1, hypothetical protein OS493_035621 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7TMC8	L-fucose kinase OS=Mus musculus OX=10090 GN=Fcsk PE=1 SV=1
Q8N0W3	L-fucose kinase OS=Homo sapiens OX=9606 GN=FCSK PE=1 SV=2
Q9LNJ9	Bifunctional fucokinase/GDP-fucose pyrophosphorylase OS=Arabidopsis thaliana OX=3702 GN=FKGP PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001981 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08544 all species →	GHMP_kinases_C	GHMP kinases C terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013750 all species →	Domain	GHMP kinase, C-terminal domain	Interproscan
IPR052203 all species →	Family	GHMP Kinase-Related Enzymes	Interproscan
IPR036554 all species →	Homologous_superfamily	GHMP kinase, C-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR32463 all species →	L-FUCOSE KINASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042352 all species →	Biological Process	GDP-L-fucose salvage	Interproscan
GO:0050201 all species →	Molecular Function	fucokinase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035621-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035621-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

62.9Max TPM

31.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	31.80	44.14
polyp at pH7 6	18	18	32.31	43.69
coral polyp · control treatment	16	16	40.00	58.67
coral polyp · oil and dispersant treatment	16	16	28.93	48.08
coral polyp · oil treatment	16	16	36.73	62.95
coral polyp · dispersant treatment	16	16	27.65	45.63
Polyp	10	10	17.72	29.03

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.14
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.60
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	36.90
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.55
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.96
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.06
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.26
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.99
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.72
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.50
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.63
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.12
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.10
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.89
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.38
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.69
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.28
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.51
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	41.46
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.82
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.71
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.71
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.51
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.18
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.34
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.79
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.89
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.31
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.56
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.36
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.95
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	56.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.29
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	51.28
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.65
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.60
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.41
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.20
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.17
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.54
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.30
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.42
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.42
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.08
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.84
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.85
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.91
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.98
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.32
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.68
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.92
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.50
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.03
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.02
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.54
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.43
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.95
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.87
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	40.24
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.25
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.71
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.80
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.13
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.78
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.52
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.38
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.90
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.79
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.63
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.76
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.34
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.77
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.64
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.27
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.02
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.16
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.02
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	29.03
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	25.41
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.10
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	22.19
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	21.34
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.41
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	17.06
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	4.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	2.38

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.