Gene detail

Detailed information of OS493_035786-T1 in Lophelia pertusa

Genomic Location: scaffold_335:77438...95332
NR annotation: KAJ7351722.1, Delta-like protein 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3ZHH1	Delta-like protein 4 OS=Rattus norvegicus OX=10116 GN=Dll4 PE=1 SV=3
Q9JI71	Delta-like protein 4 OS=Mus musculus OX=10090 GN=Dll4 PE=1 SV=2
Q8UWJ4	Delta-like protein D OS=Danio rerio OX=7955 GN=dld PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000327 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF21700 all species →	DL-JAG_EGF-like	Delta-like/Jagged, EGF-like domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF01414 all species →	DSL	Delta serrate ligand	Domain	Interproscan
PF07657 all species →	MNNL	N terminus of Notch ligand C2-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001774 all species →	Domain	Delta/Serrate/lag-2 (DSL) protein	Interproscan
IPR009030 all species →	Homologous_superfamily	Growth factor receptor cysteine-rich domain superfamily	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR011651 all species →	Domain	Notch ligand, N-terminal domain	Interproscan
IPR050906 all species →	Family	Notch signaling pathway	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24044 all species →	NOTCH LIGAND FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007154 all species →	Biological Process	cell communication	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0007219 all species →	Biological Process	Notch signaling pathway	Interproscan
GO:0007275 all species →	Biological Process	multicellular organism development	Interproscan
GO:0005112 all species →	Molecular Function	Notch binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06051	DLL; delta	-	Endocrine resistance	ko01522	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035786-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

64.6Max TPM

22.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	21.24	35.93
polyp at pH7 6	18	18	16.07	22.84
coral polyp · control treatment	16	16	30.93	55.57
coral polyp · oil and dispersant treatment	16	16	19.49	37.21
coral polyp · oil treatment	16	16	24.46	49.90
coral polyp · dispersant treatment	16	16	33.64	64.59
Polyp	10	10	8.62	17.53

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.93
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.23
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.97
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.76
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.35
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.28
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.09
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.69
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.51
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.11
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.84
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.50
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.47
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.84
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.86
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.83
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.35
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.86
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.18
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.17
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.81
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.77
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.43
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.10
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.29
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.18
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.57
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.19
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.80
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.16
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.53
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.20
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.83
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.25
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.69
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.42
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.93
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.43
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.21
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.56
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.45
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.26
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	23.90
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.26
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.94
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.77
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.12
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.18
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.72
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.75
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.16
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	49.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.73
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	30.93
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.45
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.03
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.29
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.51
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.04
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.46
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.25
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.59
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	57.36
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.30
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.58
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.78
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.58
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.78
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.05
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.57
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.64
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.91
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.05
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.62
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	17.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	12.74
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	10.06
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	10.06
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.61
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.36
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.74
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	5.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.20

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.