Gene detail

Detailed information of OS493_035789-T1 in Lophelia pertusa

Genomic Location: scaffold_335:147544...152203
NR annotation: KAJ7351725.1, hypothetical protein OS493_035789 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08DK7	Mitochondrial basic amino acids transporter OS=Bos taurus OX=9913 GN=SLC25A29 PE=2 SV=1
Q5HZE0	Mitochondrial basic amino acids transporter OS=Rattus norvegicus OX=10116 GN=Slc25a29 PE=2 SV=1
Q8BL03	Mitochondrial basic amino acids transporter OS=Mus musculus OX=10090 GN=Slc25a29 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000470 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00153 all species →	Mito_carr	Mitochondrial carrier protein	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR050567 all species →	Family	Mitochondrial Carrier	Interproscan
IPR023395 all species →	Homologous_superfamily	Mitochondrial carrier domain superfamily	Interproscan
IPR018108 all species →	Repeat	Mitochondrial substrate/solute carrier	Interproscan
IPR002067 all species →	Family	Mitochondrial carrier protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR45624 all species →	MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005289 all species →	Molecular Function	high-affinity L-arginine transmembrane transporter activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006810 all species →	Biological Process	transport	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:1990575 all species →	Biological Process	mitochondrial L-ornithine transmembrane transport	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035789-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035789-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

401.0Max TPM

56.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	22.35	33.98
polyp at pH7 6	18	18	23.30	38.58
coral polyp · control treatment	16	16	61.62	184.98
coral polyp · oil and dispersant treatment	16	16	117.64	297.76
coral polyp · oil treatment	16	16	52.48	101.33
coral polyp · dispersant treatment	16	16	98.19	401.04
Polyp	10	10	13.06	22.83

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	33.98
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.37
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.07
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.98
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.26
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.29
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.20
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.29
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.99
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.89
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.46
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.03
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.72
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.41
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.30
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.66
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.87
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	33.66
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.79
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.53
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.91
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.15
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.68
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.18
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.84
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.74
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.51
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.43
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.21
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	184.98
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	91.51
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.83
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	74.90
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	54.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.67
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	53.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.37
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.23
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.92
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.74
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	40.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.68
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.63
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	297.76
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	284.77
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.93
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	178.76
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.89
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	121.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	120.70
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.31
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	86.32
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.86
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	59.00
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	53.58
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	52.35
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	51.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.24
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	101.33
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.60
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.84
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.29
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.28
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	62.66
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.63
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.10
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.78
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.64
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	31.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.96
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.06
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.18
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.27
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	401.04
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	170.68
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.77
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	123.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	114.36
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	108.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	99.16
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.73
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.60
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	51.37
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.38
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.40
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	31.93
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.40
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	22.83
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	22.13
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	17.46
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	14.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.20
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	10.87
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	10.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	8.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.76
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	5.12

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.