Gene detail

Detailed information of OS493_035791-T1 in Lophelia pertusa

Genomic Location: scaffold_335:167648...178037
NR annotation: KAJ7351727.1, hypothetical protein OS493_035791 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9DBY8	Nuclear valosin-containing protein-like OS=Mus musculus OX=10090 GN=Nvl PE=1 SV=1
O15381	Nuclear valosin-containing protein-like OS=Homo sapiens OX=9606 GN=NVL PE=1 SV=1
Q9NAG4	Protein mac-1 OS=Caenorhabditis elegans OX=6239 GN=mac-1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000746 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00004 all species →	AAA	ATPase family associated with various cellular activities (AAA)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003959 all species →	Domain	ATPase, AAA-type, core	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR038100 all species →	Homologous_superfamily	NVL2, N-terminal domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23076 all species →	METALLOPROTEASE M41 FTSH	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0016887 all species →	Molecular Function	ATP hydrolysis activity	Interproscan
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0009534 all species →	Cellular Component	chloroplast thylakoid	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035791-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035791-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

81TPM > 0

7Conditions

17.9Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	6	0.41	1.66
polyp at pH7 6	18	5	0.54	3.67
coral polyp · control treatment	16	16	7.08	17.94
coral polyp · oil and dispersant treatment	16	16	5.87	17.88
coral polyp · oil treatment	16	16	4.73	16.59
coral polyp · dispersant treatment	16	15	5.25	14.10
Polyp	10	7	0.74	3.25

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.66
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.51
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.90
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.67
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.16
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.74
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.35
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.81
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.94
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.62
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.80
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.27
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.85
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.53
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.57
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.88
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.65
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.68
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.11
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.90
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.68
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.47
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.31
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.83
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.13
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.92
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.59
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.31
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.26
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.37
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.89
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.63
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.56
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.65
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.32
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.21
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.87
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.10
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.51
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.13
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.45
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.38
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.33
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.61
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.03
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.20
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.87
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.25
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	1.33
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	0.85
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	0.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	0.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	0.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.31
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.