Gene detail

Detailed information of OS493_035803-T1 in Lophelia pertusa

Genomic Location: scaffold_335:279686...284422
NR annotation: KAJ7351737.1, Mitochondrial import receptor subunit TOM20 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DFM9	Mitochondrial import receptor subunit TOM20 homolog OS=Xenopus tropicalis OX=8364 GN=tomm20 PE=2 SV=1
Q8AVY0	Mitochondrial import receptor subunit TOM20 homolog OS=Xenopus laevis OX=8355 GN=tomm20 PE=2 SV=1
Q9DCC8	Mitochondrial import receptor subunit TOM20 homolog OS=Mus musculus OX=10090 GN=Tomm20 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008264 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02064 all species →	MAS20	MAS20 protein import receptor	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR022422 all species →	Family	Protein import receptor MAS20, metazoan	Interproscan
IPR002056 all species →	Family	Protein import receptor MAS20	Interproscan
IPR023392 all species →	Homologous_superfamily	Mitochondrial outer membrane translocase complex, Tom20 domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12430 all species →	MITOCHONDRIAL IMPORT RECEPTOR SUBUNIT TOM20	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005742 all species →	Cellular Component	mitochondrial outer membrane translocase complex	Interproscan
GO:0006605 all species →	Biological Process	protein targeting	Interproscan
GO:0006886 all species →	Biological Process	intracellular protein transport	Interproscan
GO:0008320 all species →	Molecular Function	protein transmembrane transporter activity	Interproscan
GO:0016031 all species →	Biological Process	tRNA import into mitochondrion	Interproscan
GO:0030150 all species →	Biological Process	protein import into mitochondrial matrix	Interproscan
GO:0030943 all species →	Molecular Function	mitochondrion targeting sequence binding	Interproscan
GO:0031307 all species →	Cellular Component	obsolete integral component of mitochondrial outer membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17770	TOM20; mitochondrial import receptor subunit TOM20	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035803-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

649.1Max TPM

158.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	134.30	209.41
polyp at pH7 6	18	18	158.75	208.74
coral polyp · control treatment	16	16	151.39	328.03
coral polyp · oil and dispersant treatment	16	16	169.82	323.88
coral polyp · oil treatment	16	16	136.95	211.27
coral polyp · dispersant treatment	16	16	127.56	280.57
Polyp	10	10	273.77	649.11

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	209.41
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	191.18
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	168.72
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	158.57
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	144.09
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	136.14
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	133.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	130.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	128.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	126.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.04
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	121.00
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	119.55
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	115.43
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	113.62
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.66
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	97.22
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	96.73
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	208.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	192.46
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	190.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	187.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	185.31
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	183.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	183.38
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	179.65
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	162.65
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	148.40
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	148.35
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	147.69
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	147.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	145.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	119.42
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	115.09
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	110.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	102.11
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	328.03
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	191.34
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	175.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	165.69
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	164.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	153.48
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	152.01
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	138.10
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	137.03
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	134.96
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	119.17
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	117.55
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	116.14
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.71
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	103.30
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	323.88
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	251.69
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	211.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	206.84
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	179.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	175.05
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	166.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	162.78
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	148.83
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	148.05
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	143.17
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	139.51
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.83
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	118.52
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	116.64
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	91.70
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	211.27
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	187.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	160.78
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	159.78
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	157.02
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	152.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	128.40
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	126.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	125.05
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	122.02
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	120.90
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	115.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.41
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.31
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.46
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	280.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	173.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	162.81
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	149.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	125.40
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	117.52
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.82
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	111.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.65
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	107.48
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.21
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.84
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	95.52
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	85.07
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	65.81
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	649.11
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	567.26
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	344.43
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	225.23
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	217.04
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	179.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	170.77
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	161.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	116.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	105.86

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.