Detailed information of OS493_035807-T1 in Lophelia pertusa

Genomic Location: scaffold_335:327337...343287
NR annotation: KAJ7351741.1, DNA binding [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q8BXJ2Transcriptional-regulating factor 1 OS=Mus musculus OX=10090 GN=Trerf1 PE=1 SV=1
Q96PN7Transcriptional-regulating factor 1 OS=Homo sapiens OX=9606 GN=TRERF1 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0003867 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF01448
all species →		ELM2ELM2 domainFamilyInterproscan
PF00096
all species →		zf-C2H2Zinc finger, C2H2 typeDomainInterproscan
PF13912
all species →		zf-C2H2_6C2H2-type zinc fingerDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013087
all species →		DomainZinc finger C2H2-typeInterproscan
IPR051066
all species →		FamilyTranscriptional Regulator and CorepressorInterproscan
IPR036236
all species →		Homologous_superfamilyZinc finger C2H2 superfamilyInterproscan
IPR000949
all species →		DomainELM2 domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16089
all species →		REST COREPRESSOR COREST PROTEIN-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000118
all species →		Cellular Componenthistone deacetylase complexInterproscan
GO:0003714
all species →		Molecular Functiontranscription corepressor activityInterproscan
GO:0005667
all species →		Cellular Componenttranscription regulator complexInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0045892
all species →		Biological Processnegative regulation of DNA-templated transcriptionInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for OS493_035807-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
Expression pattern
 Expression trend for OS493_035807-T1 global co-expression network
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