Gene detail

Detailed information of OS493_035810-T1 in Lophelia pertusa

Genomic Location: scaffold_335:356346...357436
NR annotation: KAJ7351744.1, hypothetical protein OS493_035810 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NQX3	Gephyrin OS=Homo sapiens OX=9606 GN=GPHN PE=1 SV=1
Q03555	Gephyrin OS=Rattus norvegicus OX=10116 GN=Gphn PE=1 SV=3
Q8BUV3	Gephyrin OS=Mus musculus OX=10090 GN=Gphn PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00994 all species →	MoCF_biosynth	Probable molybdopterin binding domain	Domain	Interproscan
PF03454 all species →	MoeA_C	MoeA C-terminal region (domain IV)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR038987 all species →	Family	Molybdopterin biosynthesis protein MoeA-like	Interproscan
IPR036425 all species →	Homologous_superfamily	MoaB/Mog-like domain superfamily	Interproscan
IPR001453 all species →	Domain	MoaB/Mog domain	Interproscan
IPR008284 all species →	Conserved_site	Molybdenum cofactor biosynthesis, conserved site	Interproscan
IPR036688 all species →	Homologous_superfamily	MoeA, C-terminal, domain IV superfamily	Interproscan
IPR005111 all species →	Domain	MoeA, C-terminal, domain IV	Interproscan
IPR036135 all species →	Homologous_superfamily	MoeA, N-terminal and linker domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10192 all species →	MOLYBDOPTERIN BIOSYNTHESIS PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006777 all species →	Biological Process	Mo-molybdopterin cofactor biosynthetic process	Interproscan
GO:0032324 all species →	Biological Process	molybdopterin cofactor biosynthetic process	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0018315 all species →	Biological Process	molybdenum incorporation into molybdenum-molybdopterin complex	Interproscan
GO:0061599 all species →	Molecular Function	molybdopterin molybdotransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035810-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035810-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

104TPM > 0

7Conditions

9.6Max TPM

3.3Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	3.64	6.74
polyp at pH7 6	18	17	2.74	4.29
coral polyp · control treatment	16	16	4.31	6.90
coral polyp · oil and dispersant treatment	16	14	2.44	8.34
coral polyp · oil treatment	16	15	4.35	9.63
coral polyp · dispersant treatment	16	16	2.61	7.06
Polyp	10	9	3.13	7.09

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.25
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.15
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.64
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.32
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.92
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.89
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.74
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.46
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.34
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.21
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.88
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.29
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.84
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.63
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.60
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.43
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.40
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.21
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.56
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.44
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.26
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.10
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.92
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.61
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.24
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.19
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.12
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.61
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.53
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.43
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.46
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.26
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.10
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.34
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.87
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.80
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.98
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.97
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.71
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.66
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.52
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.43
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.86
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.63
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.87
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.26
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.24
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.41
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.38
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.22
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.01
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.63
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.35
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.40
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.00
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.62
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.62
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.15
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.10
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.33
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.85
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.56
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.51
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.15
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.32
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.29
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.09
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.33
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.96
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.38
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	3.35
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.42
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.80
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.38
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.