Gene detail

Detailed information of OS493_035811-T1 in Lophelia pertusa

Genomic Location: scaffold_335:357503...358216
NR annotation: KAJ7351745.1, hypothetical protein OS493_035811 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9PW38	Gephyrin OS=Gallus gallus OX=9031 GN=GPHN PE=1 SV=1
Q9NQX3	Gephyrin OS=Homo sapiens OX=9606 GN=GPHN PE=1 SV=1
Q8BUV3	Gephyrin OS=Mus musculus OX=10090 GN=Gphn PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004191 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00994 all species →	MoCF_biosynth	Probable molybdopterin binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001453 all species →	Domain	MoaB/Mog domain	Interproscan
IPR008284 all species →	Conserved_site	Molybdenum cofactor biosynthesis, conserved site	Interproscan
IPR036425 all species →	Homologous_superfamily	MoaB/Mog-like domain superfamily	Interproscan
IPR051920 all species →	Family	Molybdopterin Adenylyltransferase/MoaC-Related	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43764 all species →	MOLYBDENUM COFACTOR BIOSYNTHESIS	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006777 all species →	Biological Process	Mo-molybdopterin cofactor biosynthetic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035811-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035811-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

10.7Max TPM

3.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	4.77	9.39
polyp at pH7 6	18	18	3.98	8.70
coral polyp · control treatment	16	16	4.74	9.11
coral polyp · oil and dispersant treatment	16	16	3.48	9.20
coral polyp · oil treatment	16	16	4.26	10.69
coral polyp · dispersant treatment	16	16	3.54	8.23
Polyp	10	9	1.41	3.45

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.39
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.39
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.90
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.80
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.01
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.88
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.75
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.19
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.95
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.72
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.26
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.25
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.63
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.56
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.50
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.70
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.31
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.04
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.91
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.31
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.34
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.40
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.26
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.01
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.11
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.64
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.17
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.01
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.58
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.51
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.21
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.27
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.66
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.47
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.31
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.06
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.96
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.20
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.42
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.85
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.48
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.93
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.33
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.29
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.74
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.48
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.17
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.63
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.37
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.25
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.69
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.75
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.99
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.62
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.72
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.23
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.07
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.20
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.64
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.66
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.23
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.94
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.30
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.53
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.48
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.75
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.31
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.13
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.54
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.83
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.45
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	2.74
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.76
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.01
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.66
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.57
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.