Gene detail

Detailed information of OS493_035819-T1 in Lophelia pertusa

Genomic Location: scaffold_336:113214...114305
NR annotation: KAJ7319509.1, hypothetical protein OS493_035819 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006667 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14719 all species →	PID_2	Phosphotyrosine interaction domain (PTB/PID)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011993 all species →	Homologous_superfamily	PH-like domain superfamily	Interproscan
IPR039112 all species →	Family	Phosphotyrosine interaction domain containing 1	Interproscan
IPR006020 all species →	Domain	PTB/PI domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16265 all species →	PTB-CONTAINING, CUBILIN AND LRP1-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0042127 all species →	Biological Process	regulation of cell population proliferation	Interproscan
GO:0046627 all species →	Biological Process	negative regulation of insulin receptor signaling pathway	Interproscan
GO:0051881 all species →	Biological Process	regulation of mitochondrial membrane potential	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K12474	LDLRAP1, ARH; low density lipoprotein receptor adapter protein 1	-	Membrane trafficking	ko04131	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035819-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

319.1Max TPM

67.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	32.85	49.76
polyp at pH7 6	18	18	33.53	48.75
coral polyp · control treatment	16	16	70.09	142.39
coral polyp · oil and dispersant treatment	16	16	107.48	186.89
coral polyp · oil treatment	16	16	54.61	91.67
coral polyp · dispersant treatment	16	16	136.40	319.07
Polyp	10	10	37.87	51.52

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	49.76
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.31
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.99
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.55
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.62
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	40.98
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.68
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	39.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.10
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.09
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.53
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.44
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.18
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.55
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.26
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.84
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.79
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	48.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	47.73
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.72
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.24
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	38.37
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	35.91
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.84
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.90
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.79
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.17
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.97
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.59
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.16
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	142.39
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	114.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.12
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	83.75
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	81.25
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	77.33
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.40
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	63.58
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	58.20
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.44
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	57.18
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.27
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.04
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.70
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.91
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.93
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	186.89
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	151.19
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	142.22
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	132.32
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.95
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.44
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	114.99
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	113.36
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	109.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	108.92
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	101.53
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	79.28
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.82
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.14
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.78
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	91.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	77.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.07
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	71.32
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	63.20
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.08
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	55.66
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.24
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.62
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	47.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.96
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.30
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.78
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	319.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	264.67
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	221.10
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	174.86
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	162.81
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	159.71
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	144.29
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	133.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	116.80
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	94.83
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	91.06
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	87.44
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.37
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.10
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	61.91
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.62
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	51.52
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	50.37
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	47.14
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	46.83
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	39.07
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	34.52
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	33.46
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.87
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.34

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.