Gene detail

Detailed information of OS493_035860-T1 in Lophelia pertusa

Genomic Location: scaffold_337:167241...172021
NR annotation: KAJ7388750.1, hypothetical protein OS493_035860 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010850 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01753 all species →	zf-MYND	MYND finger	Domain	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002893 all species →	Domain	Zinc finger, MYND-type	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24126 all species →	ANKYRIN REPEAT, PH AND SEC7 DOMAIN CONTAINING PROTEIN SECG-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035860-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035860-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

32.3Max TPM

14.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	14.75	23.13
polyp at pH7 6	18	18	17.50	32.27
coral polyp · control treatment	16	16	15.84	21.02
coral polyp · oil and dispersant treatment	16	16	11.39	18.65
coral polyp · oil treatment	16	16	15.17	20.75
coral polyp · dispersant treatment	16	16	7.22	13.45
Polyp	10	10	17.83	25.84

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.13
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.17
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.84
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.76
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.27
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.81
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.37
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.30
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.07
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.84
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.46
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.05
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.82
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.46
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.27
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.35
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.42
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.11
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.42
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.03
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.93
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.70
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.44
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.90
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.76
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.02
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.93
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.67
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.07
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.79
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.00
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.36
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.02
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.65
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.50
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.05
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.71
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.64
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.65
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.59
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.27
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.84
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.32
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.61
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.44
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.41
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.33
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.06
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.90
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.03
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.61
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.37
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.73
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.43
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.39
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.01
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.01
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.52
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.35
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.00
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.61
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.32
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.29
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.02
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.83
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.02
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.54
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.22
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.81
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.60
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.76
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.44
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	25.84
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	25.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.24
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	20.77
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.54
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	16.51
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	13.06
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.04
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	12.02
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.16

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.