Gene detail

Detailed information of OS493_035921-T1 in Lophelia pertusa

Genomic Location: scaffold_339:257584...269129
NR annotation: KAJ7376259.1, Dynamin-2 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q08DF4	Dynamin-1 OS=Bos taurus OX=9913 GN=DNM1 PE=1 SV=1
Q05193	Dynamin-1 OS=Homo sapiens OX=9606 GN=DNM1 PE=1 SV=2
P21575	Dynamin-1 OS=Rattus norvegicus OX=10116 GN=Dnm1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001381 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01031 all species →	Dynamin_M	Dynamin central region	Family	Interproscan
PF00350 all species →	Dynamin_N	Dynamin family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000375 all species →	Domain	Dynamin stalk domain	Interproscan
IPR027417 all species →	Homologous_superfamily	P-loop containing nucleoside triphosphate hydrolase	Interproscan
IPR001401 all species →	Domain	Dynamin, GTPase domain	Interproscan
IPR030381 all species →	Domain	Dynamin-type guanine nucleotide-binding (G) domain	Interproscan
IPR022812 all species →	Family	Dynamin	Interproscan
IPR045063 all species →	Domain	Dynamin, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11566 all species →	DYNAMIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003924 all species →	Molecular Function	GTPase activity	Interproscan
GO:0005525 all species →	Molecular Function	GTP binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0005874 all species →	Cellular Component	microtubule	Interproscan
GO:0008017 all species →	Molecular Function	microtubule binding	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035921-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035921-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

55.1Max TPM

17.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.95	16.14
polyp at pH7 6	18	18	10.17	17.52
coral polyp · control treatment	16	16	19.91	33.12
coral polyp · oil and dispersant treatment	16	16	31.23	55.09
coral polyp · oil treatment	16	16	15.42	25.20
coral polyp · dispersant treatment	16	16	29.62	45.68
Polyp	10	9	4.29	8.76

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.14
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.47
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.00
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.70
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.97
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.91
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.76
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.40
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.95
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.00
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.80
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.55
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.86
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.19
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.52
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.50
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.24
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.01
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.50
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.01
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.16
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.23
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.22
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.63
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.24
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.99
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.82
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.41
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.15
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.12
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.04
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.34
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.25
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.48
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.87
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.32
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.54
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.18
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.97
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.27
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.29
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.86
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.71
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.39
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.09
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.10
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.14
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	36.35
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.89
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.57
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	31.99
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	29.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.59
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.78
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.41
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.23
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.94
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.56
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.20
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.93
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.80
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.91
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.83
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.75
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.15
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.43
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.01
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.96
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.68
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.11
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.21
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.68
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.90
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	42.14
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.84
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.76
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.16
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.22
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.99
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.54
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.51
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	27.12
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.24
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.54
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.31
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.76
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.48
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	5.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.33
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.15
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.53
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	2.75
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.90
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.