Gene detail

Detailed information of OS493_035926-T1 in Lophelia pertusa

Genomic Location: scaffold_339:311233...319083
NR annotation: KAJ7376264.1, Multivesicular body subunit 12B [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007604 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF10240 all species →	DUF2464	Multivesicular body subunit 12	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR040335 all species →	Family	Multivesicular body subunit 12A	Interproscan
IPR018798 all species →	Family	Multivesicular body subunit 12	Interproscan
IPR023341 all species →	Domain	MABP domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31612 all species →	MULTIVESICULAR BODY SUBUNIT 12A	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000813 all species →	Cellular Component	ESCRT I complex	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019075 all species →	Biological Process	virus maturation	Interproscan
GO:0032510 all species →	Biological Process	endosome to lysosome transport via multivesicular body sorting pathway	Interproscan
GO:0032801 all species →	Biological Process	receptor catabolic process	Interproscan
GO:0042058 all species →	Biological Process	regulation of epidermal growth factor receptor signaling pathway	Interproscan
GO:0046755 all species →	Biological Process	viral budding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035926-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035926-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

42.4Max TPM

16.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	15.22	23.17
polyp at pH7 6	18	17	13.44	23.95
coral polyp · control treatment	16	16	21.05	32.96
coral polyp · oil and dispersant treatment	16	16	16.82	42.44
coral polyp · oil treatment	16	16	19.98	26.32
coral polyp · dispersant treatment	16	16	14.54	23.19
Polyp	10	10	14.44	20.74

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.31
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.75
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.75
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.88
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.72
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.87
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.83
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.47
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.02
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.77
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.71
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.08
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.78
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.47
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.53
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.40
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.53
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.11
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.04
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.78
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.12
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.93
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.33
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.67
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.50
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.19
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.17
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.96
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.94
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	31.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.21
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.81
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.25
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.88
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.61
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.94
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.56
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.19
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.48
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.44
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.34
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.60
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.16
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.90
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.94
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.28
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.16
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.24
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.69
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.83
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.40
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.31
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.32
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.82
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.12
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.72
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.20
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.19
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.94
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.94
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.76
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.92
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.12
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.81
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.19
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.99
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.84
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.43
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.12
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.07
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.34
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.05
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.39
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.34
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.96
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.65
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.61
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.53
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.74
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	18.68
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	18.42
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	17.57
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	14.25
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	13.96
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	12.05
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	11.15
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.98

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.