Gene detail

Detailed information of OS493_035944-T1 in Lophelia pertusa

Genomic Location: scaffold_340:223115...234756
NR annotation: KAJ7369867.1, Erlin-1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28DX1	Erlin-1 OS=Xenopus tropicalis OX=8364 GN=erlin1 PE=2 SV=1
O94905	Erlin-2 OS=Homo sapiens OX=9606 GN=ERLIN2 PE=1 SV=1
Q5R7C5	Erlin-2 OS=Pongo abelii OX=9601 GN=ERLIN2 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007390 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01145 all species →	Band_7	SPFH domain / Band 7 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR033294 all species →	Family	Erlin1/2	Interproscan
IPR001107 all species →	Domain	Band 7 domain	Interproscan
IPR036013 all species →	Homologous_superfamily	Band 7/SPFH domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15351 all species →	ERLIN (ER LIPID RAFT ASSOCIATED PROTEIN) HOMOLOG	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005783 all species →	Cellular Component	endoplasmic reticulum	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0005789 all species →	Cellular Component	endoplasmic reticulum membrane	Interproscan
GO:0015485 all species →	Molecular Function	cholesterol binding	Interproscan
GO:0032933 all species →	Biological Process	SREBP signaling pathway	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23341	ERLIN; erlin	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035944-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

155.3Max TPM

81.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	77.76	104.24
polyp at pH7 6	18	18	81.92	118.56
coral polyp · control treatment	16	16	96.69	155.32
coral polyp · oil and dispersant treatment	16	16	81.18	122.25
coral polyp · oil treatment	16	16	93.14	144.89
coral polyp · dispersant treatment	16	16	70.14	109.57
Polyp	10	10	57.25	97.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	104.24
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	103.21
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	89.39
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	87.12
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	86.57
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	84.45
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	81.32
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	80.89
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	79.97
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	78.21
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	72.48
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	71.29
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	68.91
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	64.28
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	60.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	58.03
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.57
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	118.56
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	113.37
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	113.36
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.39
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.81
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.62
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	86.19
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	81.14
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	80.45
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	77.04
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.94
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.74
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.37
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	76.14
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	59.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	56.43
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.96
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	54.25
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	155.32
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	135.02
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	133.41
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	130.64
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	126.88
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	109.92
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.99
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	93.79
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	90.02
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	89.01
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	82.14
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	79.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	75.86
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	67.07
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.09
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.90
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	122.25
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	106.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	102.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	96.19
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	95.51
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.49
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	89.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	84.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	83.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	75.36
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	74.92
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	57.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.65
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	54.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.82
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	144.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	130.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	121.48
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	114.18
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	109.58
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.32
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	102.00
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	100.38
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	93.08
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.49
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	85.62
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	74.88
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	60.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	59.83
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.68
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.57
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	98.83
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	86.27
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.36
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	82.32
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	81.28
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	80.74
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	77.56
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	76.69
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	68.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.89
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	64.17
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	63.52
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.65
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.61
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	97.70
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	95.22
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	94.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	62.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	61.02
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	53.63
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	33.08
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	26.89
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	25.88
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.