Gene detail

Detailed information of OS493_035986-T1 in Lophelia pertusa

Genomic Location: scaffold_342:259562...264319
NR annotation: KAJ7319499.1, RING finger protein 32 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JIT1	RING finger protein 32 OS=Mus musculus OX=10090 GN=Rnf32 PE=1 SV=1
Q4R5T4	RING finger protein 32 OS=Macaca fascicularis OX=9541 GN=RNF32 PE=2 SV=1
Q9H0A6	RING finger protein 32 OS=Homo sapiens OX=9606 GN=RNF32 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005703 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_035986-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR042862 all species →	Family	RING finger protein 32	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14991 all species →	RING FINGER PROTEIN 32	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_035986-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035986-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035986-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

9.1Max TPM

3.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	2.95	6.86
polyp at pH7 6	18	12	1.57	3.62
coral polyp · control treatment	16	16	5.22	8.97
coral polyp · oil and dispersant treatment	16	16	4.08	8.93
coral polyp · oil treatment	16	16	6.00	9.14
coral polyp · dispersant treatment	16	16	2.59	5.21
Polyp	10	8	3.02	6.70

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.86
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.19
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.02
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.42
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.36
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.21
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.17
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.57
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.55
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.41
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.45
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.38
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.62
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.43
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.93
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.62
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.61
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.24
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.15
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.73
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.64
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.92
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.97
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.75
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.97
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.37
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.08
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.53
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.88
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.56
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.11
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.08
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.07
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.72
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.32
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.93
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.08
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.86
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.23
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.10
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.49
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.41
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.18
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.09
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.01
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.75
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.70
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.04
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.34
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.14
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.67
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.04
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.75
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.36
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.02
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.85
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.35
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.21
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.16
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.37
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.92
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.21
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.66
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.38
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.59
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.07
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.06
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.69
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.30
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.89
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.79
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.78
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.76
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.52
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.89
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.56
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.70
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.80
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.67
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	3.54
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	3.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.15
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.97
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.