Gene detail

Detailed information of OS493_035999-T1 in Lophelia pertusa

Genomic Location: scaffold_343:130968...135007
NR annotation: KAJ7388721.1, hypothetical protein OS493_035999 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q7Z569	BRCA1-associated protein OS=Homo sapiens OX=9606 GN=BRAP PE=1 SV=2
Q99MP8	BRCA1-associated protein OS=Mus musculus OX=10090 GN=Brap PE=1 SV=1
Q95QN6	BRCA1-associated protein homolog 2 OS=Caenorhabditis elegans OX=6239 GN=brap-2 PE=3 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003415 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_035999-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

No InterPro signature was detected for OS493_035999-T1. This gene does have a gene model — the search simply returned no hit.

PANTHER

PANTHER term	Description	Source
PTHR24007 all species →	BRCA1-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007265 all species →	Biological Process	Ras protein signal transduction	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0061630 all species →	Molecular Function	ubiquitin protein ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_035999-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_035999-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

107TPM > 0

7Conditions

25.5Max TPM

6.9Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.99	14.99
polyp at pH7 6	18	16	7.46	16.06
coral polyp · control treatment	16	16	6.58	10.50
coral polyp · oil and dispersant treatment	16	16	3.64	6.37
coral polyp · oil treatment	16	16	7.11	9.49
coral polyp · dispersant treatment	16	16	3.42	7.17
Polyp	10	9	14.66	25.49

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.99
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.49
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.15
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.78
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.94
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.84
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.45
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.33
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.24
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.72
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.58
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.14
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.53
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.42
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.35
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.34
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.04
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.71
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.95
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.47
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.19
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.86
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.95
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.32
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.32
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.50
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.97
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.59
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.56
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.19
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.08
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.56
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.07
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.77
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.43
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.71
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.82
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.66
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.37
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.62
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.36
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.24
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.08
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.87
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.61
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.41
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.10
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.95
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.25
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.87
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.49
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.02
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.97
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.92
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.60
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.16
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.85
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.06
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.03
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.65
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.17
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.67
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.55
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.43
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.64
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.33
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.28
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.20
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.91
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.82
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.24
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.68
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.57
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.49
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.48
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	25.49
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.89
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	20.80
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	19.28
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	18.76
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	13.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.85
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	7.11
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.24
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.