Gene detail

Detailed information of OS493_036006-T1 in Lophelia pertusa

Genomic Location: scaffold_343:252314...264120
NR annotation: KAJ7388728.1, Serine/threonine-protein kinase 36 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q69ZM6	Serine/threonine-protein kinase 36 OS=Mus musculus OX=10090 GN=Stk36 PE=1 SV=3
Q55FT4	Probable serine/threonine-protein kinase tsuA OS=Dictyostelium discoideum OX=44689 GN=tsuA PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004122 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13646 all species →	HEAT_2	HEAT repeats	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR000225 all species →	Repeat	Armadillo	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22983 all species →	PROTEIN KINASE RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007228 all species →	Biological Process	obsolete positive regulation of hh target transcription factor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036006-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036006-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

15.0Max TPM

6.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	8.82	12.35
polyp at pH7 6	18	18	7.83	12.07
coral polyp · control treatment	16	16	6.25	11.81
coral polyp · oil and dispersant treatment	16	16	3.86	7.52
coral polyp · oil treatment	16	16	6.53	12.39
coral polyp · dispersant treatment	16	16	5.26	11.49
Polyp	10	10	8.25	14.97

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.35
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.27
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.01
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.66
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.59
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.58
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.41
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.07
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.66
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.64
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.91
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.78
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.58
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.54
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.76
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.59
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.47
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.43
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.99
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.03
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.85
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.60
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.48
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.27
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.24
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.19
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.58
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.51
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.81
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.42
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.80
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.14
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.89
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.83
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.10
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.00
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.74
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.06
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.67
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.03
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.52
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.90
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.64
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.06
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.82
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.78
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.71
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.12
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.55
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.54
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.26
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.44
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.39
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.57
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.89
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.55
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.27
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.02
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.85
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.29
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.46
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.13
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.90
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.74
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.58
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.31
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.49
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.86
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.52
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.35
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.58
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.78
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.08
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.74
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.80
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.55
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.99
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.72
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	14.97
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.63
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	11.78
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	11.30
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	10.14
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.88
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.68
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.30
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.84

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.