Gene detail

Detailed information of OS493_036053-T1 in Lophelia pertusa

Genomic Location: scaffold_345:315999...319809
NR annotation: KAJ7376230.1, hypothetical protein OS493_036053 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A4IHF8	Protein DPCD OS=Xenopus tropicalis OX=8364 GN=dpcd PE=2 SV=1
A5D8N2	Protein DPCD OS=Xenopus laevis OX=8355 GN=dpcd PE=2 SV=1
Q9BVM2	Protein DPCD OS=Homo sapiens OX=9606 GN=DPCD PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010101 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14913 all species →	DPCD	DPCD protein family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR026224 all species →	Family	Protein DPCD	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR31921 all species →	PROTEIN DPCD	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_036053-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20800	DPCD; protein DPCD	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036053-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

101TPM > 0

7Conditions

5.6Max TPM

2.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	16	2.12	3.88
polyp at pH7 6	18	13	2.14	4.05
coral polyp · control treatment	16	16	2.55	5.30
coral polyp · oil and dispersant treatment	16	16	1.66	4.31
coral polyp · oil treatment	16	16	2.44	4.42
coral polyp · dispersant treatment	16	14	1.42	4.53
Polyp	10	10	3.59	5.60

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.88
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.79
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.71
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.59
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.49
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.11
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.52
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.19
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.80
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.76
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.65
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.56
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.40
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.33
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.32
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.97
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.05
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.57
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.43
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.38
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.07
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.99
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.63
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.31
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.84
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.83
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.48
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.30
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.58
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.49
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.48
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.01
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.81
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.58
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.52
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.10
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.99
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.76
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.75
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.64
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.55
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.31
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.73
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.07
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.85
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.74
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.51
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.24
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.16
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.14
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.06
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.84
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.70
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.60
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.51
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.42
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.81
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.48
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.13
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.77
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.45
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.56
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.28
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.27
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.18
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.97
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.69
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.46
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.41
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.05
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.88
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.29
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.20
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.01
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.98
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.58
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.39
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.34
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	5.60
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	5.52
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	5.35
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	4.60
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.89
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	3.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	1.87
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.42
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	1.31

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.