Gene detail

Detailed information of OS493_036057-T1 in Lophelia pertusa

Genomic Location: scaffold_346:34229...43166
NR annotation: KAJ7369835.1, hypothetical protein OS493_036057 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q95M12	Legumain OS=Bos taurus OX=9913 GN=LGMN PE=1 SV=1
Q9R0J8	Legumain OS=Rattus norvegicus OX=10116 GN=Lgmn PE=1 SV=1
O89017	Legumain OS=Mus musculus OX=10090 GN=Lgmn PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003737 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF20985 all species →	Legum_prodom	Legumain, prodomain	Domain	Interproscan
PF01650 all species →	Peptidase_C13	Peptidase C13 family	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR048501 all species →	Domain	Legumain, prodomain	Interproscan
IPR001096 all species →	Family	Peptidase C13, legumain	Interproscan
IPR046427 all species →	Homologous_superfamily	Legumain prodomain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12000 all species →	HEMOGLOBINASE FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004197 all species →	Molecular Function	cysteine-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0006624 all species →	Biological Process	vacuolar protein processing	Interproscan
GO:0008233 all species →	Molecular Function	peptidase activity	Interproscan
GO:0051603 all species →	Biological Process	proteolysis involved in protein catabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01369	LGMN; legumain	EC:3.4.22.34	Peptidases and inhibitors	ko01002	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036057-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

942.3Max TPM

294.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	340.62	548.59
polyp at pH7 6	18	18	318.21	497.80
coral polyp · control treatment	16	16	308.67	504.26
coral polyp · oil and dispersant treatment	16	16	360.78	796.48
coral polyp · oil treatment	16	16	275.39	942.26
coral polyp · dispersant treatment	16	16	239.79	455.37
Polyp	10	10	159.37	445.77

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	548.59
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	540.08
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	408.53
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	394.84
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	394.51
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	387.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	385.95
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	362.61
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	350.53
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	347.54
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	324.43
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	320.03
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	305.18
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	303.39
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	225.26
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	219.82
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.64
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	148.65
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	497.80
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	487.35
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	482.30
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	469.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	424.46
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	411.55
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	387.58
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	383.24
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	312.49
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	311.29
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	244.64
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	244.11
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	188.07
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	187.29
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	183.11
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	182.70
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	167.07
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	163.66
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	504.26
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	500.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	434.08
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	415.56
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	397.56
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	380.24
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	341.34
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	334.86
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	298.75
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	276.55
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	255.02
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	250.83
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	195.75
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	159.22
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	123.71
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	70.85
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	796.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	512.77
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	502.64
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	465.27
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	434.08
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	433.53
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	391.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	327.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	326.47
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	291.14
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	282.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	251.00
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	239.22
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	235.59
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	157.50
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	125.15
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	942.26
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	527.15
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	339.98
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	338.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	301.39
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	284.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	262.45
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	233.76
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	229.55
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	211.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	184.53
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	158.42
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	152.42
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	124.15
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	72.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	42.46
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	455.37
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	400.02
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	373.42
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	358.05
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	345.95
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	259.94
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	250.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	244.63
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	235.24
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	189.55
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	187.40
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	178.78
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	151.75
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	144.01
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	53.45
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	445.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	288.28
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	255.57
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	131.91
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	125.71
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	123.05
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	73.04
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	72.29
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	53.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.41

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.