Gene detail

Detailed information of OS493_036086-T1 in Lophelia pertusa

Genomic Location: scaffold_347:128523...137310
NR annotation: KAJ7351671.1, Microtubule-associated serine/threonine-protein kinase 4 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9R1L5	Microtubule-associated serine/threonine-protein kinase 1 OS=Mus musculus OX=10090 GN=Mast1 PE=1 SV=3
Q810W7	Microtubule-associated serine/threonine-protein kinase 1 OS=Rattus norvegicus OX=10116 GN=Mast1 PE=1 SV=1
Q9Y2H9	Microtubule-associated serine/threonine-protein kinase 1 OS=Homo sapiens OX=9606 GN=MAST1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002586 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08926 all species →	DUF1908	Domain of unknown function (DUF1908)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR023142 all species →	Homologous_superfamily	Microtubule-associated serine/threonine-protein kinase, pre-PK domain superfamily	Interproscan
IPR015022 all species →	Domain	Microtubule-associated serine/threonine-protein kinase, pre-PK domain	Interproscan

PANTHER

No PANTHER signature was detected for OS493_036086-T1. This gene does have a gene model — the search simply returned no hit.

Gene Ontology

GO term	Category	Description	Source
GO:0004674 all species →	Molecular Function	protein serine/threonine kinase activity	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006468 all species →	Biological Process	protein phosphorylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036086-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036086-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

28.9Max TPM

13.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.63	20.81
polyp at pH7 6	18	17	11.83	20.25
coral polyp · control treatment	16	16	17.22	28.94
coral polyp · oil and dispersant treatment	16	16	14.59	26.30
coral polyp · oil treatment	16	16	14.49	24.26
coral polyp · dispersant treatment	16	16	14.40	21.73
Polyp	10	10	7.03	15.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.81
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.38
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.54
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.74
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.02
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.95
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.72
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.55
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.66
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.98
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.42
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.77
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.73
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.50
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.22
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.91
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.25
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.48
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.77
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.58
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.18
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.91
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.35
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.96
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.57
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.71
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.81
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.34
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.94
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.87
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.27
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.11
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.43
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.19
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.30
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.00
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.92
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.15
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.36
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.16
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.30
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.99
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.12
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.96
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.66
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.57
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.43
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.45
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.42
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.19
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.29
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.22
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.26
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.75
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.66
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.55
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.23
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.00
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.76
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.44
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.79
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.67
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.23
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.47
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.73
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.67
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.41
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.33
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.21
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.08
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.45
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.56
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.76
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.44
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.98
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.78
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.23
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.15
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.38
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	15.92
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	12.90
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.14
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	7.92
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.85
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.62
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	4.95
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	3.11
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	2.99
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.93

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.