Gene detail

Detailed information of OS493_036151-T1 in Lophelia pertusa

Genomic Location: scaffold_350:17830...21869
NR annotation: KAJ7382249.1, Regulatory protein, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006747 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15745 all species →	AP1AR	AP-1 complex-associated regulatory protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR031483 all species →	Family	AP-1 complex-associated regulatory protein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR34529 all species →	AP-1 COMPLEX-ASSOCIATED REGULATORY PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0034315 all species →	Biological Process	regulation of Arp2/3 complex-mediated actin nucleation	Interproscan
GO:0035650 all species →	Molecular Function	AP-1 adaptor complex binding	Interproscan
GO:0048203 all species →	Biological Process	vesicle targeting, trans-Golgi to endosome	Interproscan
GO:1900025 all species →	Biological Process	negative regulation of substrate adhesion-dependent cell spreading	Interproscan
GO:2000146 all species →	Biological Process	negative regulation of cell motility	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036151-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036151-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

45.2Max TPM

16.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	17	8.02	14.13
polyp at pH7 6	18	18	10.55	18.44
coral polyp · control treatment	16	16	20.91	45.24
coral polyp · oil and dispersant treatment	16	16	26.17	44.73
coral polyp · oil treatment	16	16	17.66	34.89
coral polyp · dispersant treatment	16	16	20.24	30.14
Polyp	10	9	7.69	14.47

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.13
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.45
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.31
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.26
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.74
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.32
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.27
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.94
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.70
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.65
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.63
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.52
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.41
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.36
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.16
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.49
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.00
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.06
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.39
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.86
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.45
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.33
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.37
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.89
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.52
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.97
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.71
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.06
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.47
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.24
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	41.27
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.69
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.92
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.12
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.04
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.82
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.83
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.89
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.16
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.92
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.73
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.62
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.45
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.90
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.59
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.17
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.11
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.43
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.21
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.56
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.79
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.86
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.48
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.21
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.11
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.89
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.00
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.71
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.67
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.80
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.30
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.53
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.32
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.22
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.89
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.78
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.53
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.06
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.41
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.88
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.59
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	30.14
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.69
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.35
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.20
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.57
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.91
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.74
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.30
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.49
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.21
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.79
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.75
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.94
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	14.47
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	11.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	8.58
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.28
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	8.03
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	8.00
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.55
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.44
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	3.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.