Gene detail

Detailed information of OS493_036156-T1 in Lophelia pertusa

Genomic Location: scaffold_350:77599...81312
NR annotation: KAJ7382253.1, cell redox homeostasis [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008735 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00085 all species →	Thioredoxin	Thioredoxin	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013766 all species →	Domain	Thioredoxin domain	Interproscan
IPR036249 all species →	Homologous_superfamily	Thioredoxin-like superfamily	Interproscan
IPR042418 all species →	Family	Thioredoxin domain-containing protein 15	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14684 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005929 all species →	Cellular Component	cilium	Interproscan
GO:0060271 all species →	Biological Process	cilium assembly	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K25389	TXNDC15; thioredoxin domain-containing protein 15	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036156-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

28.0Max TPM

8.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	7.84	11.69
polyp at pH7 6	18	18	7.83	12.01
coral polyp · control treatment	16	16	10.40	24.45
coral polyp · oil and dispersant treatment	16	16	9.19	28.05
coral polyp · oil treatment	16	16	9.37	15.35
coral polyp · dispersant treatment	16	16	5.45	10.39
Polyp	10	9	6.69	12.40

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.69
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.28
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.31
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.33
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.68
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.53
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.47
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.31
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.30
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.97
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.93
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.81
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.22
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.54
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.01
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.37
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.33
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.00
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.02
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.92
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.04
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.49
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.42
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.98
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.45
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.14
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.94
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.86
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.28
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.93
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.45
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.48
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.45
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.59
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.49
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.11
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.62
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.94
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.62
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.46
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.85
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.68
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.18
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.05
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.49
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.50
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.29
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.85
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.14
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.78
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.63
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.42
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.00
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.26
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.82
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.93
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.33
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.35
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	13.07
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.21
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.17
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.75
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.71
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.22
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.69
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.44
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.23
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.01
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.93
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.79
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.72
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.40
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.26
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.57
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.22
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.03
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.91
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.53
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.51
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.45
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.36
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.31
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.23
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.86
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.64
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.42
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	12.40
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	9.40
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	9.23
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	9.15
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	8.01
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	6.51
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.39
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.97
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.83
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.