Gene detail

Detailed information of OS493_036163-T1 in Lophelia pertusa

Genomic Location: scaffold_350:121552...128169
NR annotation: KAJ7382260.1, spermatogenesis-assoc protein 6 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005249 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14909 all species →	SPATA6	Spermatogenesis-assoc protein 6	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR042769 all species →	Family	SPATA6 family	Interproscan
IPR032732 all species →	Domain	Spermatogenesis-associated protein 6, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16435 all species →	SPERMATOGENESIS-ASSOCIATED PROTEIN 6 SPATA6	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007283 all species →	Biological Process	spermatogenesis	Interproscan
GO:0032027 all species →	Molecular Function	myosin light chain binding	Interproscan
GO:0097224 all species →	Cellular Component	obsolete sperm connecting piece	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036163-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036163-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

51.9Max TPM

26.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	29.06	42.12
polyp at pH7 6	18	18	27.15	40.61
coral polyp · control treatment	16	16	24.87	39.24
coral polyp · oil and dispersant treatment	16	16	25.49	46.87
coral polyp · oil treatment	16	16	30.19	51.95
coral polyp · dispersant treatment	16	16	19.32	33.77
Polyp	10	10	25.85	44.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	42.12
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.13
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.30
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.15
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.79
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.74
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	31.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.74
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.76
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.86
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.91
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.23
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.10
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.46
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.97
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.93
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.03
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.61
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.96
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.51
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.95
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.50
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.49
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.30
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.75
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.21
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.70
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.57
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.51
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.21
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.15
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.57
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.09
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.24
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.79
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.42
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.17
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.77
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.70
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.69
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.41
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.69
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.57
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.21
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.21
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.85
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.87
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.73
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.87
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	42.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.13
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.62
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.74
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.48
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.13
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.86
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.33
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.41
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.96
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.91
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.55
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.50
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.77
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.66
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	51.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	46.49
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	44.47
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	36.55
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.47
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.23
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.98
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.68
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	32.34
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.48
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.19
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.08
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.90
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.32
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.64
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.34
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.77
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.60
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.66
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.81
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.63
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.67
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.67
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.50
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.29
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.94
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	14.66
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.07
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.81
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.57
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.09
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	44.92
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	40.59
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	38.21
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	31.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	23.01
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	22.44
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.90
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.31
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	10.54
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	7.81

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.