Gene detail

Detailed information of OS493_036179-T1 in Lophelia pertusa

Genomic Location: scaffold_350:275325...285208
NR annotation: KAJ7382276.1, hypothetical protein OS493_036179 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O95876	WD repeat-containing and planar cell polarity effector protein fritz homolog OS=Homo sapiens OX=9606 GN=WDPCP PE=1 SV=2
Q8C456	WD repeat-containing and planar cell polarity effector protein fritz homolog OS=Mus musculus OX=10090 GN=Wdpcp PE=1 SV=1
Q32NR9	WD repeat-containing and planar cell polarity effector protein fritz homolog OS=Xenopus laevis OX=8355 GN=wdpcp PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003668 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF11768 all species →	Frtz	WD repeat-containing and planar cell polarity effector protein Fritz	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015943 all species →	Homologous_superfamily	WD40/YVTN repeat-like-containing domain superfamily	Interproscan
IPR024511 all species →	Family	WD repeat-containing and planar cell polarity effector protein Fritz	Interproscan
IPR036322 all species →	Homologous_superfamily	WD40-repeat-containing domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13667 all species →	HOMOLOC-13	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0007399 all species →	Biological Process	nervous system development	Interproscan
GO:0044782 all species →	Biological Process	cilium organization	Interproscan
GO:0045184 all species →	Biological Process	establishment of protein localization	Interproscan
GO:0097541 all species →	Cellular Component	axonemal basal plate	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K22863	WDPCP, CPLANE5; WD repeat-containing and planar cell polarity effector protein	-	Cilium and associated proteins	ko03037	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036179-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

94.4Max TPM

22.1Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	18.43	25.21
polyp at pH7 6	18	18	19.54	31.13
coral polyp · control treatment	16	16	27.58	94.38
coral polyp · oil and dispersant treatment	16	16	33.21	56.64
coral polyp · oil treatment	16	16	23.17	39.27
coral polyp · dispersant treatment	16	16	14.67	32.05
Polyp	10	10	16.95	27.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.21
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.17
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.63
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.14
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.45
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.05
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.86
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.26
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.08
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.80
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.61
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.60
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.99
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.85
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.65
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.33
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	12.27
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.84
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	31.13
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.16
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.23
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.89
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.15
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.98
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.63
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.75
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.62
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.15
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.10
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.03
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.65
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.22
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.79
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.64
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	94.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	45.09
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.87
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.07
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	28.27
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.00
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.77
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.43
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.07
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.91
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.49
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.43
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.11
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.89
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.65
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.80
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	56.64
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	50.79
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	43.87
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	40.11
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.15
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.23
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.88
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	34.05
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.48
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.82
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.30
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.52
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.10
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.27
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.31
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.36
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.97
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	26.35
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.06
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.89
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.13
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.96
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.61
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.72
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.31
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.60
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.45
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.13
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	32.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.48
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.17
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.92
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.13
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.75
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.03
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.44
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.39
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.35
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.18
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.29
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	27.69
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	26.15
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	24.87
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.54
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.04
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	16.35
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	12.14
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	8.27
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.73
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	3.74

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.