Gene detail

Detailed information of OS493_036182-T1 in Lophelia pertusa

Genomic Location: scaffold_350:319872...332419
NR annotation: KAJ7382279.1, cell cycle [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q8BMS9	Ras association domain-containing protein 2 OS=Mus musculus OX=10090 GN=Rassf2 PE=1 SV=1
Q3B7D5	Ras association domain-containing protein 2 OS=Rattus norvegicus OX=10116 GN=Rassf2 PE=2 SV=1
P50749	Ras association domain-containing protein 2 OS=Homo sapiens OX=9606 GN=RASSF2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001125 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16517 all species →	Nore1-SARAH	Novel Ras effector 1 C-terminal SARAH (Sav/Rassf/Hpo) domain	Domain	Interproscan
PF00412 all species →	LIM	LIM domain	Domain	Interproscan
PF00788 all species →	RA	Ras association (RalGDS/AF-6) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011524 all species →	Domain	SARAH domain	Interproscan
IPR001781 all species →	Domain	Zinc finger, LIM-type	Interproscan
IPR000159 all species →	Domain	Ras-associating domain	Interproscan
IPR029071 all species →	Homologous_superfamily	Ubiquitin-like domain superfamily	Interproscan
IPR033614 all species →	Family	Ras association domain-containing protein 1-6	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22738 all species →	RASSF	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007165 all species →	Biological Process	signal transduction	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09851	RASSF2_4; Ras association domain-containing protein 2/4	-	Hippo signaling pathway - multiple species	ko04392	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036182-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

103.1Max TPM

27.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	20.64	30.46
polyp at pH7 6	18	18	22.24	32.34
coral polyp · control treatment	16	16	27.81	43.18
coral polyp · oil and dispersant treatment	16	16	39.21	65.26
coral polyp · oil treatment	16	16	22.38	34.43
coral polyp · dispersant treatment	16	16	44.16	103.08
Polyp	10	10	13.38	24.05

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.46
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.77
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.64
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.40
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.81
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.43
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.42
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.39
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.10
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.30
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.84
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.83
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.63
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	16.54
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.28
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.80
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.86
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.34
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.04
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.70
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.10
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.93
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.87
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.19
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.29
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.30
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.94
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.80
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.14
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.72
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.20
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.93
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.55
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.62
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.59
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	43.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	39.10
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.66
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.87
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.18
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	26.84
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.68
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.23
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.16
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.69
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.35
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.20
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.78
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.91
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	65.26
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	63.50
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	58.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	48.68
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	44.76
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.64
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	37.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.69
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.15
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.66
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	22.87
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.35
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	21.06
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.78
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.43
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	34.00
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.97
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.54
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	27.02
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.39
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.86
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.23
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.65
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.41
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.04
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.84
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.41
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	103.08
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	58.23
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	56.86
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	52.24
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	49.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	45.56
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.83
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	43.45
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.58
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.53
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	40.06
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	38.43
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	35.18
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	29.54
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.55
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.50
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	24.05
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	21.81
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	16.09
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	13.51
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	12.42
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	11.25
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.84
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.87
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	1.48

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.