Gene detail

Detailed information of OS493_036215-T1 in Lophelia pertusa

Genomic Location: scaffold_354:30201...46546
NR annotation: KAJ7319449.1, F-actin-capping protein subunit alpha [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P40123	Adenylyl cyclase-associated protein 2 OS=Homo sapiens OX=9606 GN=CAP2 PE=1 SV=1
Q5R5X8	Adenylyl cyclase-associated protein 2 OS=Pongo abelii OX=9601 GN=CAP2 PE=2 SV=1
Q9CYT6	Adenylyl cyclase-associated protein 2 OS=Mus musculus OX=10090 GN=Cap2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002487 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08603 all species →	CAP_C	Adenylate cyclase associated (CAP) C terminal	Family	Interproscan
PF01213 all species →	CAP_N	Adenylate cyclase associated (CAP) N terminal	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036222 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, N-terminal domain superfamily	Interproscan
IPR036223 all species →	Homologous_superfamily	Adenylate cyclase-associated CAP, C-terminal superfamily	Interproscan
IPR001837 all species →	Family	Adenylate cyclase-associated CAP	Interproscan
IPR006599 all species →	Domain	CARP motif	Interproscan
IPR016098 all species →	Homologous_superfamily	Cyclase-associated protein CAP/septum formation inhibitor MinC, C-terminal	Interproscan
IPR017901 all species →	Domain	C-CAP/cofactor C-like domain	Interproscan
IPR013912 all species →	Domain	Adenylate cyclase-associated CAP, C-terminal	Interproscan
IPR013992 all species →	Domain	Adenylate cyclase-associated CAP, N-terminal	Interproscan
IPR018106 all species →	Conserved_site	CAP, conserved site, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10652 all species →	ADENYLYL CYCLASE-ASSOCIATED PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000902 all species →	Biological Process	cell morphogenesis	Interproscan
GO:0003779 all species →	Molecular Function	actin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0007010 all species →	Biological Process	cytoskeleton organization	Interproscan
GO:0007015 all species →	Biological Process	actin filament organization	Interproscan
GO:0008179 all species →	Molecular Function	adenylate cyclase binding	Interproscan
GO:0019933 all species →	Biological Process	cAMP-mediated signaling	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K17261	CAP1_2, SRV2; adenylyl cyclase-associated protein	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036215-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

255.2Max TPM

143.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	133.40	165.49
polyp at pH7 6	18	18	131.85	170.99
coral polyp · control treatment	16	16	176.57	255.20
coral polyp · oil and dispersant treatment	16	16	145.99	215.14
coral polyp · oil treatment	16	16	152.35	249.73
coral polyp · dispersant treatment	16	16	141.74	233.09
Polyp	10	10	108.40	134.93

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	165.49
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	163.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.98
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	156.13
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	139.33
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	139.22
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	137.54
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	134.44
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	134.24
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	130.75
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	130.19
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	123.13
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	120.83
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	117.72
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.61
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	116.22
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	110.67
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	108.17
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	170.99
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	166.24
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	162.59
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	161.89
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	159.65
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	159.42
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	158.48
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	156.07
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	131.62
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	128.02
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	125.65
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	124.77
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	105.11
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.74
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	93.53
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.85
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	92.53
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	90.15
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	255.20
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	228.65
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	228.15
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	214.28
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	211.16
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	200.60
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	196.42
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	187.47
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	180.98
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	158.09
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	152.28
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	148.42
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	139.72
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	127.20
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	110.60
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.85
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	215.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	211.51
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	194.02
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	186.25
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	166.50
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	165.72
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	155.26
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	154.44
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	152.53
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	147.38
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	143.35
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	104.33
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	103.55
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	88.22
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	82.98
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	64.73
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	249.73
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	218.08
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	214.90
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	203.26
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	202.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	197.41
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	177.84
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	171.63
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	142.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	126.54
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	113.48
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	103.17
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	88.76
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	78.25
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	76.49
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	73.05
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	233.09
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	208.32
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	184.05
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	180.04
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	169.17
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	165.34
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	163.87
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	161.01
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	158.99
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	115.19
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	115.16
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	109.66
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	106.45
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	83.44
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	67.53
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	46.52
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	134.93
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	134.04
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	133.31
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	126.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	126.11
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	113.93
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	100.91
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	94.78
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	77.37
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	42.02

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.