Gene detail

Detailed information of OS493_036259-T1 in Lophelia pertusa

Genomic Location: scaffold_356:150996...160889
NR annotation: KAJ7382226.1, Protein N-terminal glutamine amidohydrolase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5PPU8	Protein N-terminal glutamine amidohydrolase OS=Xenopus laevis OX=8355 GN=ntaq1 PE=2 SV=1
Q1LWX3	Protein N-terminal glutamine amidohydrolase OS=Danio rerio OX=7955 GN=ntaq1 PE=2 SV=1
Q5BJV9	Protein N-terminal glutamine amidohydrolase OS=Rattus norvegicus OX=10116 GN=Ntaq1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007296 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF09764 all species →	Nt_Gln_amidase	N-terminal glutamine amidase	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037132 all species →	Homologous_superfamily	Protein N-terminal glutamine amidohydrolase, alpha beta roll superfamily	Interproscan
IPR039733 all species →	Family	Protein N-terminal glutamine amidohydrolase	Interproscan
IPR023128 all species →	Domain	Protein N-terminal glutamine amidohydrolase, alpha beta roll	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13035 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016811 all species →	Molecular Function	hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0008418 all species →	Molecular Function	protein-N-terminal asparagine amidohydrolase activity	Interproscan
GO:0070773 all species →	Molecular Function	protein-N-terminal glutamine amidohydrolase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21286	NTAQ1; protein N-terminal glutamine amidohydrolase	EC:3.5.1.122	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036259-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

66.1Max TPM

23.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	27.79	47.62
polyp at pH7 6	18	18	29.14	43.13
coral polyp · control treatment	16	16	20.48	32.89
coral polyp · oil and dispersant treatment	16	16	17.84	41.06
coral polyp · oil treatment	16	16	21.89	29.39
coral polyp · dispersant treatment	16	16	10.70	22.70
Polyp	10	10	36.78	66.13

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.62
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.99
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	30.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.66
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.36
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.22
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.18
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.13
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.60
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.83
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.43
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.30
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.82
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.76
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.73
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.42
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.77
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.13
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	42.94
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	34.04
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.14
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.75
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.68
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.45
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.34
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.58
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	28.03
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.14
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.77
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.50
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.47
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.09
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.78
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.89
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.85
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	32.89
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	30.05
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	27.60
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	24.76
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.73
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.55
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.44
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.42
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.31
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.63
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.02
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.16
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.58
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.32
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.38
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.87
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.06
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.60
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	20.26
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	19.05
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.77
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.73
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	18.34
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.61
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.55
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.32
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.98
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.34
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.50
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.13
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.16
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.06
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.39
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.94
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.37
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.00
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.84
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.93
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.64
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.94
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.68
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.57
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.84
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.61
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.53
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.75
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.20
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.70
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.49
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.99
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.22
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.93
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.05
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.35
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.96
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.94
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.89
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.19
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.90
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.76
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.25
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	66.13
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	45.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	39.36
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	36.67
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	36.28
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	34.00
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	33.69
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	32.64
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	24.31
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	19.60

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.