Gene detail

Detailed information of OS493_036260-T1 in Lophelia pertusa

Genomic Location: scaffold_356:160999...163734
NR annotation: KAJ7382227.1, Glycosyltransferase 28 C-terminal domain [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5I0K7	UDP-N-acetylglucosamine transferase subunit ALG13 OS=Rattus norvegicus OX=10116 GN=Alg13 PE=1 SV=1
Q9NP73	UDP-N-acetylglucosamine transferase subunit ALG13 OS=Homo sapiens OX=9606 GN=ALG13 PE=1 SV=2
Q9D8C3	UDP-N-acetylglucosamine transferase subunit ALG13 OS=Mus musculus OX=10090 GN=Alg13 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008587 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04101 all species →	Glyco_tran_28_C	Glycosyltransferase family 28 C-terminal domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR039042 all species →	Family	UDP-N-acetylglucosamine transferase subunit Alg13-like	Interproscan
IPR007235 all species →	Domain	Glycosyl transferase, family 28, C-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12867 all species →	GLYCOSYL TRANSFERASE-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006488 all species →	Biological Process	dolichol-linked oligosaccharide biosynthetic process	Interproscan
GO:0016758 all species →	Molecular Function	hexosyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K07432	ALG13; beta-1,4-N-acetylglucosaminyltransferase	EC:2.4.1.141	Glycosyltransferases	ko01003	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036260-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

109TPM > 0

7Conditions

26.7Max TPM

5.6Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	5.36	10.83
polyp at pH7 6	18	18	5.34	9.22
coral polyp · control treatment	16	16	7.33	13.54
coral polyp · oil and dispersant treatment	16	16	5.40	26.66
coral polyp · oil treatment	16	16	6.23	9.59
coral polyp · dispersant treatment	16	16	3.51	6.72
Polyp	10	9	6.45	17.55

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.83
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.99
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.18
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.15
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.17
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.56
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.42
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.30
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.21
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.49
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.92
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.60
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.49
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.47
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.12
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.22
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.88
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.85
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.09
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.53
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.87
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.75
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.71
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.68
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.65
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.58
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.48
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.44
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.88
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.54
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.49
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.47
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.18
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.02
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.39
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.06
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.93
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.63
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.39
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.22
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.01
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.52
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.50
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.11
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	26.66
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.81
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.37
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.70
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.74
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.64
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.37
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.57
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.40
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.21
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.04
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.86
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.27
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.20
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.56
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.04
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.59
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.53
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.00
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.49
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.45
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.13
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.24
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.03
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.01
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.74
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.80
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.51
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.30
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.44
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.88
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.72
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.88
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.49
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.11
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.04
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.56
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.49
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.34
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.31
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.12
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.95
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.90
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.63
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.96
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.73
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	17.55
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	7.56
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	7.46
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	7.31
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	7.24
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.19
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	4.14
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	4.02
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.