Gene detail

Detailed information of OS493_036262-T1 in Lophelia pertusa

Genomic Location: scaffold_356:168389...171085
NR annotation: KAJ7382229.1, Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28C98	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Xenopus tropicalis OX=8364 GN=hddc3 PE=2 SV=1
Q568P1	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Danio rerio OX=7955 GN=hddc3 PE=2 SV=1
Q8N4P3	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase MESH1 OS=Homo sapiens OX=9606 GN=HDDC3 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0010171 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13328 all species →	HD_4	HD domain	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003607 all species →	Domain	HD/PDEase domain	Interproscan
IPR052194 all species →	Family	Guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46246 all species →	GUANOSINE-3',5'-BIS(DIPHOSPHATE) 3'-PYROPHOSPHOHYDROLASE MESH1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0008893 all species →	Molecular Function	guanosine-3',5'-bis(diphosphate) 3'-diphosphatase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K21138	HDDC3; guanosine-3',5'-bis(diphosphate) 3'-pyrophosphohydrolase	EC:3.1.7.2	Purine metabolism	ko00230	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036262-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

108TPM > 0

7Conditions

38.4Max TPM

11.4Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	12.46	27.82
polyp at pH7 6	18	17	12.40	20.05
coral polyp · control treatment	16	16	13.47	37.10
coral polyp · oil and dispersant treatment	16	16	9.56	38.38
coral polyp · oil treatment	16	16	10.80	15.42
coral polyp · dispersant treatment	16	16	5.57	12.49
Polyp	10	9	18.01	34.19

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	27.82
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.08
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.73
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.12
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.99
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	14.05
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	13.06
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.48
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.85
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.67
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.25
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.16
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.99
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.97
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	9.17
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.85
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.96
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.06
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.05
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	17.14
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.20
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.13
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.91
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.08
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.27
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.91
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.22
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.08
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.95
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	11.76
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.81
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.23
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.32
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	9.29
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	8.81
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.10
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.68
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.52
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	16.05
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.38
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.49
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.51
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.38
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	13.24
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.03
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.90
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.32
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.78
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.32
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.55
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.23
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	38.38
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.17
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.02
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.25
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.11
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.63
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.62
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.31
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.45
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.39
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.02
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.79
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.03
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.53
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.92
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.43
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.42
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.41
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.35
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.70
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.16
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.99
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.94
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.73
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.15
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.98
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.35
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.15
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	9.03
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.85
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.76
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.47
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.09
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.71
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.28
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.59
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.27
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.87
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.29
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.91
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.64
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.60
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.22
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	3.09
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.13
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	34.19
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	32.23
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	23.80
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	21.31
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	20.02
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	16.77
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.70
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	9.73
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	6.36
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.