Gene detail

Detailed information of OS493_036341-T1 in Lophelia pertusa

Genomic Location: scaffold_359:72779...79660
NR annotation: KAJ7351139.1, Aspartate aminotransferase, mitochondrial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28F67	Aspartate aminotransferase, mitochondrial OS=Xenopus tropicalis OX=8364 GN=got2 PE=2 SV=1
P12345	Aspartate aminotransferase, mitochondrial OS=Oryctolagus cuniculus OX=9986 GN=GOT2 PE=1 SV=2
P05202	Aspartate aminotransferase, mitochondrial OS=Mus musculus OX=10090 GN=Got2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001598 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00155 all species →	Aminotran_1_2	Aminotransferase class I and II	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000796 all species →	Family	Aspartate/other aminotransferase	Interproscan
IPR015422 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, small domain	Interproscan
IPR015421 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase, major domain	Interproscan
IPR015424 all species →	Homologous_superfamily	Pyridoxal phosphate-dependent transferase	Interproscan
IPR004838 all species →	Binding_site	Aminotransferases, class-I, pyridoxal-phosphate-binding site	Interproscan
IPR004839 all species →	Domain	Aminotransferase, class I/classII	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11879 all species →	ASPARTATE AMINOTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006520 all species →	Biological Process	amino acid metabolic process	Interproscan
GO:0008483 all species →	Molecular Function	transaminase activity	Interproscan
GO:0004069 all species →	Molecular Function	L-aspartate:2-oxoglutarate aminotransferase activity	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006533 all species →	Biological Process	aspartate catabolic process	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0009058 all species →	Biological Process	biosynthetic process	Interproscan
GO:0030170 all species →	Molecular Function	pyridoxal phosphate binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036341-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036341-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

41.9Max TPM

15.7Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	17.74	28.71
polyp at pH7 6	18	18	18.47	30.12
coral polyp · control treatment	16	16	18.26	37.57
coral polyp · oil and dispersant treatment	16	16	12.48	41.89
coral polyp · oil treatment	16	16	15.88	29.44
coral polyp · dispersant treatment	16	16	13.07	26.60
Polyp	10	10	12.42	25.69

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.71
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.71
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	25.48
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	24.23
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	23.30
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.96
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.00
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.76
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.62
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.96
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.61
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.58
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	11.12
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	10.94
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	8.87
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.34
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	7.09
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.96
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	30.12
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.90
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	26.31
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	24.23
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.56
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.90
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.32
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.19
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	16.33
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	14.54
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.30
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	12.80
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	10.06
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.92
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.58
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	37.57
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.96
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.08
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.67
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.14
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.91
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.64
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.31
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.41
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.20
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	9.38
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.88
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.67
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	7.61
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.35
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.40
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	41.89
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	16.05
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.94
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.12
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.80
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.71
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.95
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.68
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	10.95
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.34
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.83
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.60
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.18
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	6.79
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.53
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	29.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	28.16
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.53
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.88
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.14
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	16.64
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	15.96
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.91
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	14.42
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	12.39
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.24
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	10.13
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.32
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	8.25
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.38
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.25
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	26.60
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	23.27
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	21.19
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	19.17
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.47
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	15.33
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.21
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	12.61
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.29
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.08
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.85
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.14
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.08
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.58
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.18
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.03
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.69
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	19.70
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	17.09
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	16.30
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.79
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	9.19
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	8.57
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	5.16
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	5.16
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	1.54

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.