Gene detail

Detailed information of OS493_036344-T1 in Lophelia pertusa

Genomic Location: scaffold_359:93211...97407
NR annotation: KAJ7351142.1, hypothetical protein OS493_036344 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q28H30	UPF0489 protein C5orf22 homolog OS=Xenopus tropicalis OX=8364 GN=TEgg058p12.1 PE=2 SV=1
Q49AR2	UPF0489 protein C5orf22 OS=Homo sapiens OX=9606 GN=C5orf22 PE=1 SV=2
Q5R5W9	UPF0489 protein C5orf22 homolog OS=Pongo abelii OX=9601 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005648 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12640 all species →	UPF0489	UPF0489 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR024131 all species →	Family	Uncharacterised protein family UPF0489	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13225 all species →	MISEXPRESSION SUPPRESSOR OF RAS 6	Interproscan

Gene Ontology

No Gene Ontology signature was detected for OS493_036344-T1. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036344-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036344-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

106TPM > 0

7Conditions

15.0Max TPM

3.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	3.66	5.29
polyp at pH7 6	18	16	4.26	7.46
coral polyp · control treatment	16	16	4.18	15.04
coral polyp · oil and dispersant treatment	16	16	2.41	11.10
coral polyp · oil treatment	16	16	3.14	5.93
coral polyp · dispersant treatment	16	15	0.90	2.36
Polyp	10	9	3.72	6.07

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.11
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.90
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.80
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.23
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.07
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	4.05
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.90
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.59
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.52
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.12
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.10
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.05
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.75
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.27
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	1.89
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.46
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.51
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.49
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.15
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.78
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.05
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.95
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.85
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.77
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.47
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.15
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.64
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.26
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.25
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.12
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	2.73
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.04
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.85
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.16
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.65
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.42
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.40
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.39
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.61
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.30
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.05
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.85
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.78
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.65
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	1.59
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.75
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.10
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.68
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.35
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.11
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.28
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.14
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.93
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.81
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.41
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.27
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.19
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.08
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.07
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.81
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	0.57
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.93
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.52
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.05
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.98
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.84
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.82
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.76
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.68
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.01
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.50
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.43
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.16
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.68
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.09
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.95
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	0.80
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.36
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	2.10
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.93
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.10
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.88
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.75
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.71
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.60
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.59
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.54
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.45
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.16
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.11
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.00
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	6.07
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	6.00
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	5.44
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	4.72
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	4.51
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	4.24
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	3.34
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	2.07
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	0.78
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.