Gene detail

Detailed information of OS493_036347-T1 in Lophelia pertusa

Genomic Location: scaffold_359:148839...153516
NR annotation: KAJ7351145.1, Paraplegin [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9UQ90	Mitochondrial inner membrane m-AAA protease component paraplegin OS=Homo sapiens OX=9606 GN=SPG7 PE=1 SV=2
Q7TT47	Mitochondrial inner membrane m-AAA protease component paraplegin OS=Rattus norvegicus OX=10116 GN=Spg7 PE=2 SV=2
Q3ULF4	Mitochondrial inner membrane m-AAA protease component paraplegin OS=Mus musculus OX=10090 GN=Spg7 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001548 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01434 all species →	Peptidase_M41	Peptidase family M41	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR037219 all species →	Homologous_superfamily	Peptidase M41-like	Interproscan
IPR050928 all species →	Family	ATP-dependent Zinc Metalloprotease	Interproscan
IPR000642 all species →	Domain	Peptidase M41	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR43655 all species →	ATP-DEPENDENT PROTEASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004176 all species →	Molecular Function	ATP-dependent peptidase activity	Interproscan
GO:0004222 all species →	Molecular Function	metalloendopeptidase activity	Interproscan
GO:0005524 all species →	Molecular Function	ATP binding	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan
GO:0005745 all species →	Cellular Component	m-AAA complex	Interproscan
GO:0034982 all species →	Biological Process	mitochondrial protein processing	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036347-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036347-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

55.7Max TPM

20.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	24.24	35.65
polyp at pH7 6	18	18	24.42	39.75
coral polyp · control treatment	16	16	20.93	55.71
coral polyp · oil and dispersant treatment	16	16	14.39	55.17
coral polyp · oil treatment	16	16	20.94	25.87
coral polyp · dispersant treatment	16	16	10.82	18.85
Polyp	10	10	24.91	42.92

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.65
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.67
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	32.47
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.57
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	29.06
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.53
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	28.27
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	26.00
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	22.42
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	21.26
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	20.93
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.46
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.23
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	19.00
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.54
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	18.04
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	17.77
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	15.48
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.75
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.78
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	37.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.90
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	27.86
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	25.09
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.12
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.60
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.51
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.30
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	22.25
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.85
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	21.53
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	20.84
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.48
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	18.25
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	15.20
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	13.62
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	55.71
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	29.00
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	25.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	23.62
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.81
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	21.53
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	20.62
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	19.96
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	18.75
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	17.26
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.60
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	15.38
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	14.72
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	12.36
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.99
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	11.26
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	55.17
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.41
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	15.39
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	14.66
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	13.43
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.95
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.87
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.45
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	12.20
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	11.14
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.81
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	9.72
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.59
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.37
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	8.29
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.80
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.87
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.70
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.66
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	24.21
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.08
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	23.02
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	22.86
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	21.53
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.24
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.11
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	20.00
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	19.44
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.50
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	18.10
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	17.08
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	11.67
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	18.85
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	17.30
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.58
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.89
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	11.04
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	10.41
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.95
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.95
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.47
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.44
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	8.00
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.67
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.09
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.59
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	42.92
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	37.94
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	27.74
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	27.52
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	25.95
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	19.52
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	18.69
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	16.70
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	16.64
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	15.43

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.