Gene detail

Detailed information of OS493_036356-T1 in Lophelia pertusa

Genomic Location: scaffold_359:207339...210336
NR annotation: KAJ7351153.1, hypothetical protein OS493_036356 [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A2AIV2	Protein virilizer homolog OS=Mus musculus OX=10090 GN=Virma PE=1 SV=1
Q69YN4	Protein virilizer homolog OS=Homo sapiens OX=9606 GN=VIRMA PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002872 (this species only)

Pfam domain

No Pfam domain signature was detected for OS493_036356-T1. This gene does have a gene model — the search simply returned no hit.

InterPro

InterPro term	Type	Description	Source
IPR026736 all species →	Family	Protein virilizer	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23185 all species →	UNCHARACTERIZED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0036396 all species →	Cellular Component	RNA N6-methyladenosine methyltransferase complex	Interproscan
GO:0080009 all species →	Biological Process	obsolete mRNA methylation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036356-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036356-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

169.7Max TPM

47.5Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	46.35	77.93
polyp at pH7 6	18	18	49.63	72.10
coral polyp · control treatment	16	16	47.66	85.22
coral polyp · oil and dispersant treatment	16	16	37.58	78.34
coral polyp · oil treatment	16	16	51.97	81.70
coral polyp · dispersant treatment	16	16	45.19	169.70
Polyp	10	10	57.48	124.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	77.93
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	65.55
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	54.46
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	51.17
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	50.07
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	48.97
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	47.03
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	46.01
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	44.31
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	43.35
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.74
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	41.50
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.80
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	38.69
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.39
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	37.25
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	35.59
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	34.48
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	72.10
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	70.34
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.95
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	67.71
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.69
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	66.16
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	65.15
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	63.85
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	45.11
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.53
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	43.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	40.69
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	39.18
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	36.06
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	32.70
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	29.81
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	23.41
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	19.53
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	85.22
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	78.49
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	59.88
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.32
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	52.23
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	50.32
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	49.93
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	47.96
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.56
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	42.33
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	38.38
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	36.77
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	35.15
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	34.35
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	33.70
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	22.95
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	78.34
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	71.97
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	46.74
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	45.57
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	39.67
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.96
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	35.03
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	33.59
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	32.04
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	30.06
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.98
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	28.43
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	27.23
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	25.30
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	24.36
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	17.98
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	81.70
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	75.64
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	70.88
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	64.96
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	58.20
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.08
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	54.07
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	50.85
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	48.59
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	45.29
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.92
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	43.39
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	39.01
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	38.81
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	37.12
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	25.00
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	169.70
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	130.42
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	44.97
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	41.49
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.90
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	39.12
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	37.11
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	34.79
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	33.96
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	28.06
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	25.94
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	24.57
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	22.72
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	20.03
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	16.55
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	13.62
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	124.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	85.75
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	67.83
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	64.76
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	63.94
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	48.06
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	38.10
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	34.91
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	28.42
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	18.58

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.