Gene detail

Detailed information of OS493_036379-T1 in Lophelia pertusa

Genomic Location: scaffold_360:269801...279679
NR annotation: KAJ7319216.1, inorganic diphosphatase [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O77460	Inorganic pyrophosphatase OS=Drosophila melanogaster OX=7227 GN=Nurf-38 PE=1 SV=3
Q6BWA5	Inorganic pyrophosphatase OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / BCRC 21394 / JCM 1990 / NBRC 0083 / IGC 2968) OX=284592 GN=IPP1 PE=3 SV=1
P83777	Inorganic pyrophosphatase OS=Candida albicans (strain SC5314 / ATCC MYA-2876) OX=237561 GN=IPP1 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0005808 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00719 all species →	Pyrophosphatase	Inorganic pyrophosphatase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR008162 all species →	Family	Inorganic pyrophosphatase	Interproscan
IPR036649 all species →	Homologous_superfamily	Inorganic pyrophosphatase superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10286 all species →	INORGANIC PYROPHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0004427 all species →	Molecular Function	inorganic diphosphate phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006796 all species →	Biological Process	phosphate-containing compound metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K11726	NURF38; nucleosome-remodeling factor 38 kDa subunit	EC:3.6.1.1	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036379-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

110TPM > 0

7Conditions

508.2Max TPM

262.2Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	18	346.90	499.53
polyp at pH7 6	18	18	273.26	355.98
coral polyp · control treatment	16	16	248.54	403.58
coral polyp · oil and dispersant treatment	16	16	208.59	313.58
coral polyp · oil treatment	16	16	274.49	390.50
coral polyp · dispersant treatment	16	16	178.89	383.52
Polyp	10	10	311.06	508.18

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	499.53
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	493.45
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	420.64
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	413.27
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	388.85
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	386.02
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	367.89
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	359.78
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	350.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	343.49
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	334.37
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	326.28
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	310.05
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	309.81
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	278.20
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	273.38
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	199.39
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	189.82
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	355.98
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	353.32
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	345.91
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	340.85
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	287.65
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	287.50
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	287.16
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	282.98
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	278.91
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	277.44
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	272.45
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	265.08
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	261.05
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	254.37
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	241.27
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	239.73
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	150.94
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	136.13
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	403.58
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	299.42
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	290.52
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	286.42
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	278.06
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	266.72
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	266.20
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	260.42
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	249.76
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	249.09
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	230.19
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	223.49
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	216.06
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	179.06
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	149.44
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	128.12
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	313.58
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	312.33
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	311.15
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	279.76
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	242.91
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	221.46
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	202.78
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	196.78
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	187.46
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	181.31
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	176.52
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	170.88
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	167.40
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	136.87
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	119.20
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	117.08
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	390.50
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	338.76
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	338.75
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	331.99
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	319.82
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	306.54
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	302.87
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	300.63
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	283.45
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	247.62
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	225.44
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	220.58
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	216.87
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	196.32
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	187.43
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	184.27
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	383.52
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	314.50
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	228.76
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	181.62
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	172.19
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	167.48
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	167.11
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	151.70
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	146.54
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	145.99
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	139.51
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	137.98
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	136.14
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	134.07
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	134.01
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	121.09
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	508.18
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	407.99
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	366.72
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	322.85
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	284.67
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	274.13
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	260.87
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	253.25
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	217.58
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	214.35

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.