Gene detail

Detailed information of OS493_036405-T1 in Lophelia pertusa

Genomic Location: scaffold_362:97009...147014
NR annotation: KAJ7382206.1, spermatogenesis, partial [Desmophyllum pertusum]
Species Lophelia pertusa · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004519 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050842 all species →	Family	Cul2-RING E3 Ligase Substrate-Recognition Fem-1	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24173 all species →	ANKYRIN REPEAT CONTAINING	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for OS493_036405-T1.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of OS493_036405-T1 across 110 RNA-seq samples of Lophelia pertusa. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

110Samples

100TPM > 0

7Conditions

10.7Max TPM

4.0Mean TPM

By condition

Condition	Samples	TPM > 0	Mean TPM	Max TPM
polyp at pH7 9	18	14	3.14	6.53
polyp at pH7 6	18	14	3.37	7.28
coral polyp · control treatment	16	16	4.99	10.71
coral polyp · oil and dispersant treatment	16	16	4.26	7.73
coral polyp · oil treatment	16	16	4.66	7.47
coral polyp · dispersant treatment	16	16	4.88	9.52
Polyp	10	8	1.82	3.50

Per sample · hover a bar for the full sample record · show / hide the sample table

SRA run	Condition	Tissue	Developmental stage	Treatment	Study	TPM
SRR11359522	polyp at pH7 9	not recorded	not recorded	not recorded	-	6.53
SRR11359511	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.73
SRR11359523	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.38
SRR11359510	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.29
SRR11359518	polyp at pH7 9	not recorded	not recorded	not recorded	-	5.27
SRR11359499	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.94
SRR11359509	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.91
SRR11359498	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.81
SRR11359508	polyp at pH7 9	not recorded	not recorded	not recorded	-	3.47
SRR11359495	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.81
SRR11359520	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.76
SRR11359521	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.73
SRR11359496	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.59
SRR11359497	polyp at pH7 9	not recorded	not recorded	not recorded	-	2.32
SRR11359494	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359506	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359507	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359519	polyp at pH7 9	not recorded	not recorded	not recorded	-	0.00
SRR11359501	polyp at pH7 6	not recorded	not recorded	not recorded	-	7.28
SRR11359514	polyp at pH7 6	not recorded	not recorded	not recorded	-	6.33
SRR11359515	polyp at pH7 6	not recorded	not recorded	not recorded	-	5.66
SRR11359503	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359513	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.59
SRR11359529	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.49
SRR11359528	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.38
SRR11359502	polyp at pH7 6	not recorded	not recorded	not recorded	-	4.03
SRR11359526	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.87
SRR11359504	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.78
SRR11359527	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.41
SRR11359505	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.29
SRR11359516	polyp at pH7 6	not recorded	not recorded	not recorded	-	3.23
SRR11359517	polyp at pH7 6	not recorded	not recorded	not recorded	-	1.67
SRR11359500	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359512	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359524	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR11359525	polyp at pH7 6	not recorded	not recorded	not recorded	-	0.00
SRR16705973	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	10.71
SRR16705942	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	8.42
SRR16705990	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.31
SRR16705965	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	6.04
SRR16705972	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.95
SRR16705971	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.63
SRR16705960	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.56
SRR16705991	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.46
SRR16705974	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	5.07
SRR16705975	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	4.71
SRR16705943	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.90
SRR16705946	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	3.84
SRR16705957	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.70
SRR16705989	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.35
SRR16705970	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	2.26
SRR16705992	coral polyp · control treatment	coral polyp	polyp	control treatment	SRP344271	0.94
SRR16705997	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.73
SRR16705948	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	7.54
SRR16705993	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.51
SRR16706005	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	5.08
SRR16706004	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.96
SRR16705982	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.83
SRR16705978	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.44
SRR16705976	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705979	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	4.42
SRR16705944	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.75
SRR16705995	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.67
SRR16705996	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.15
SRR16705945	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	3.03
SRR16705947	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.05
SRR16705994	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	2.00
SRR16705977	coral polyp · oil and dispersant treatment	coral polyp	polyp	oil and dispersant treatment	SRP344271	1.65
SRR16706000	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	7.47
SRR16705950	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.52
SRR16705964	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	6.48
SRR16705952	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.18
SRR16706001	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705951	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.17
SRR16705999	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	5.00
SRR16705961	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.88
SRR16705981	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.59
SRR16705963	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.52
SRR16705983	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.45
SRR16705984	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	4.28
SRR16705998	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	3.99
SRR16705949	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.94
SRR16705980	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	2.27
SRR16705962	coral polyp · oil treatment	coral polyp	polyp	oil treatment	SRP344271	1.57
SRR16705954	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	9.52
SRR16705958	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	7.65
SRR16706002	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	6.46
SRR16705959	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.74
SRR16705955	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.48
SRR16705967	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	5.28
SRR16705968	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.92
SRR16705956	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.90
SRR16705986	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.53
SRR16705988	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.51
SRR16706003	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.43
SRR16705969	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.37
SRR16705966	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.36
SRR16705987	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	4.12
SRR16705985	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	1.08
SRR16705953	coral polyp · dispersant treatment	coral polyp	polyp	dispersant treatment	SRP344271	0.66
SRR23025710	Polyp	not recorded	not recorded	not recorded	-	3.50
SRR23025709	Polyp	not recorded	not recorded	not recorded	-	3.00
SRR23025711	Polyp	not recorded	not recorded	not recorded	-	2.93
SRR23025713	Polyp	not recorded	not recorded	not recorded	-	2.76
SRR7746668	Polyp	not recorded	not recorded	not recorded	-	2.29
SRR23025708	Polyp	not recorded	not recorded	not recorded	-	1.56
SRR7746666	Polyp	not recorded	not recorded	not recorded	-	1.41
SRR23025712	Polyp	not recorded	not recorded	not recorded	-	0.74
SRR7746667	Polyp	not recorded	not recorded	not recorded	-	0.00
SRR7746669	Polyp	not recorded	not recorded	not recorded	-	0.00

Source: CnidoSite RNA-seq expression matrices (LPERT_TPM, StringTie quantification over 110 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.